PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38374

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 495aa MW: 56246.8 Da PI: 10.5321

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38374	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.2	1.2e-12	17	93	9	97
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +k+g l +p f+ ++ +g k+e + + +++W+vk+ ++++ +++ W +F+++++L+ gD+++F+++g++ef v++f OIT38374 17 PGFKNG-LKIPVGFL-KYlKGHKNE---HAILRRGSKQWRVKV--NGRR----FEADWADFAQQHDLQLGDVLIFRHEGNMEF--EVTIF 93 566666.******.554666555...46667899***..8887....99*********************99999..66665 PP
2	B3	51.7	1.6e-16	154	234	5	86
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++++ l++g l lp +fa+++g+ + ++ +l+++d + rsW++kl+ +++++ y++++G ++F +n LkegD ++F+++ OIT38374 154 TIRPYCLSKGFLFLPQQFAKANGLTN-KKCDLIIRDGRQRSWNLKLSSSRRPRVYIIGDGLRKFIVDNCLKEGDRIMFEVVT 234 5789999*************8885.4569************9*****************************765 PP
3	B3	49.3	9.1e-16	293	374	5	89
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++ +k++ l+lp +f++++g+ ++ +++l++e+ rsW+v l + ++++ + +GW++F ngL++gD F+l+++ e OIT38374 293 NIKPYCTKKSVLYLPLDFLKSNGLMDRK-CEMILKNEEDRSWSVWL--GREGRHFGIVSGWSKFRTVNGLQVGDAYKFELIKNGE 374 57899999************777655.59***********..999999************************99633 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MKIVPPNKPH FFKPILPGFK NGLKIPVGFL KYLKGHKNEH AILRRGSKQW RVKVNGRRFE 60 ADWADFAQQH DLQLGDVLIF RHEGNMEFEV TIFYSSGSVR EYLQEEVHTV EETSKNEFEE 120 KASPSIKLSN KASSHAEATT LDKLPFGQSH FVCTIRPYCL SKGFLFLPQQ FAKANGLTNK 180 KCDLIIRDGR QRSWNLKLSS SRRPRVYIIG DGLRKFIVDN CLKEGDRIMF EVVTNGKIPI 240 WKFQVVTNGG TPIREFQGKK KPSNMSPLNA KVSTSTSTSG DGHDLHLPYF ISNIKPYCTK 300 KSVLYLPLDF LKSNGLMDRK CEMILKNEED RSWSVWLGRE GRHFGIVSGW SKFRTVNGLQ 360 VGDAYKFELI KNGEKPIAHF HCGAARTKGP GGIIRCLGAL GSLECQVINP RRFHLNRQRF 420 SSTTNINSRD HDIDRSTHQR HPPSISQQYS LSLTIITSLS SVIKPLSFEL FLGIEDVRTR 480 KGRKGIGKGR SKMTP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MKIVPPNKPH FFKPILPGFK NGLKIPVGFL KYLKGHKNEH AILRRGSKQW RVKVNGRRFE  60
ADWADFAQQH DLQLGDVLIF RHEGNMEFEV TIFYSSGSVR EYLQEEVHTV EETSKNEFEE  120
KASPSIKLSN KASSHAEATT LDKLPFGQSH FVCTIRPYCL SKGFLFLPQQ FAKANGLTNK  180
KCDLIIRDGR QRSWNLKLSS SRRPRVYIIG DGLRKFIVDN CLKEGDRIMF EVVTNGKIPI  240
WKFQVVTNGG TPIREFQGKK KPSNMSPLNA KVSTSTSTSG DGHDLHLPYF ISNIKPYCTK  300
KSVLYLPLDF LKSNGLMDRK CEMILKNEED RSWSVWLGRE GRHFGIVSGW SKFRTVNGLQ  360
VGDAYKFELI KNGEKPIAHF HCGAARTKGP GGIIRCLGAL GSLECQVINP RRFHLNRQRF  420
SSTTNINSRD HDIDRSTHQR HPPSISQQYS LSLTIITSLS SVIKPLSFEL FLGIEDVRTR  480
KGRKGIGKGR SKMTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	4e-47	B3 family protein

Link Out ? help Back to Top
Ensembl	OIT38374