PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38373
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 364aa    MW: 42050.1 Da    PI: 8.1195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38373genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-141695999
              HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                +k++   +p  f+ ++  g++   +++  +  ++g++W vk+  ++++    +++GW eF+++++L+ gD++vF+++g++ef   v +f++
  OIT38373 16 PGFKHD-TKIPVGFL-KYlkGYD---HIEHAILKRDGKKWMVKV--NGRR----FEDGWAEFAEEHDLQLGDMLVFRHEGNMEF--EVIIFDS 95
              556666.88999999.6655444...567888899*********..8887....9************************99999..7777775 PP
2B349.29.4e-16141229496
               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                +++++ l++g+l++pk+fa ++g+ +++   l+++de+ rsW+++l  + +++++++++ W eF  an++k+g  ++F+++  +++++  k+
  OIT38373 141 CTVKPYCLTNGLLRIPKQFALANGLANKK-CGLIIRDEKQRSWDLRL--TTYGSQVYIGGRWGEFRAANDIKVGNHIMFEVVT-NGEQPIWKF 229
               5678999****************665433.46999************..9******************************876.444456555 PP
3B356.93.8e-18261350598
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               +++++ l++++l++p++fa ++g+++++  +l+++de+ rsW+++l  r  + ++ +++GW eF + n LkegD +vF+++  +++++  +++r
  OIT38373 261 TVKPYCLSNDLLCIPRQFAHANGLINKK-CDLIIRDERQRSWSLRL--RSFGTGVCIKGGWHEFRDTNCLKEGDQIVFEVVT-NGEKPIWQFRR 350
               678999****************988654.59***************..999999*************************876.56666766666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MKIPPKKPHF LKPMLPGFKH DTKIPVGFLK YLKGYDHIEH AILKRDGKKW MVKVNGRRFE  60
DGWAEFAEEH DLQLGDMLVF RHEGNMEFEV IIFDSSQCDR EYAEYVQQEE GEVHTLEETS  120
KNFEFKDAAI HNSVGQSYFI CTVKPYCLTN GLLRIPKQFA LANGLANKKC GLIIRDEKQR  180
SWDLRLTTYG SQVYIGGRWG EFRAANDIKV GNHIMFEVVT NGEQPIWKFH DKPNPSIKSL  240
AFPHAEPATH KPFGYSHFVC TVKPYCLSND LLCIPRQFAH ANGLINKKCD LIIRDERQRS  300
WSLRLRSFGT GVCIKGGWHE FRDTNCLKEG DQIVFEVVTN GEKPIWQFRR NISGENASII  360
QEVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-51B3 family protein