PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38290

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 1056aa MW: 118585 Da PI: 5.7431

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38290	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.1	1.3e-56	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 +e ++rwl++ ei++iL n++k+++t e+++rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +fqrr+yw+L OIT38290 20 SEvQHRWLRPAEICEILRNYRKFHITPEAPHRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNFQRRSYWML 120 5559*********************************************************************************************** PP CG-1 103 eeelekivlvhylevk 118 e++l +iv+vhylevk OIT38290 121 EQDLMHIVFVHYLEVK 136 ***********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence
MADCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNYR KFHITPEAPH RPVSGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML 120 EQDLMHIVFV HYLEVKGNKA NDGCVRSIKS AHSNYLNDCS LSDSFPRSHK KLASANADST 180 SVASTLTSAH EEAESEDSHQ ACSRFQSCPE RASGMDRHLV ENRDTIYCSY GSPQSSVEYT 240 SLPGIDGGGK CGLGNFASGP QRTIDLGSQE PVSQHGSNGE MVCQDDFKNN LSVQRNWQYS 300 FGDSASQFHG QIVNQDLIGD SSYDLVNNFH NKNLSSDLYT GRGQSYLYPD EQEEQLTQLN 360 IQYLNSLVEV QGDFNQENSM DMLGLGDYST IKQPHLNSVK MEEGLKKVDS FSRWVVKELE 420 DVEELHRQPT NQISWNVIDT EDDGSCLPTQ LHVDSDSLNP SLSQEQVFSI IDFSPNWAYS 480 NLETKVLITG RFLKSEGELI ECKWSCMFGE IEVPAEVLAD GVLRCHAPPH KPGVLPFYVT 540 CSNRLACSEV REFEYRLGAY QEFGAANVSA TEMHLLERIE SLLSLGPVSS CHSSDSMEAA 600 KEKQSIVNKI ICMMEEENQQ MIERASGYDT SQCGVKEDLF LERKLKQNFY AWLVRQVTDD 660 GRGRTAIDDE GQGVLHLAAA LGYDWALKPI LASGVSVDFR DMNGWTALHW AAFYGREKTV 720 VGLVSLGASP GALTDPSAEF PLGRTPADLA SANGHKGISG FLAESSLTTH LSKLTVTDAK 780 EELASEVSGA KVGETVTERV AVTTTGDDMP DVLSLKDSLA AIRNATQAAA RIHQIFRVQS 840 FQRKQIIERS DNELSSDENA LSIVASRACK LGQNNGIAHA AATQIQKKFR GWNKRKEFLL 900 IRQKIVKIQA HVRGHQVRKK YKPIIWSVGI LEKVILRWRR KRSGLRGFRS EVVMNKPSIQ 960 DDSLPEDDYD FLKEGRKQTE VRMQKALARV KSMTQYPEGR AQYRRLLTAA EGLREVKQDG 1020 PTCILESPED TSYPEEELLD VENLLDDDTF MSIAFE

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence

MADCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNYR KFHITPEAPH RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NDGCVRSIKS AHSNYLNDCS LSDSFPRSHK KLASANADST  180
SVASTLTSAH EEAESEDSHQ ACSRFQSCPE RASGMDRHLV ENRDTIYCSY GSPQSSVEYT  240
SLPGIDGGGK CGLGNFASGP QRTIDLGSQE PVSQHGSNGE MVCQDDFKNN LSVQRNWQYS  300
FGDSASQFHG QIVNQDLIGD SSYDLVNNFH NKNLSSDLYT GRGQSYLYPD EQEEQLTQLN  360
IQYLNSLVEV QGDFNQENSM DMLGLGDYST IKQPHLNSVK MEEGLKKVDS FSRWVVKELE  420
DVEELHRQPT NQISWNVIDT EDDGSCLPTQ LHVDSDSLNP SLSQEQVFSI IDFSPNWAYS  480
NLETKVLITG RFLKSEGELI ECKWSCMFGE IEVPAEVLAD GVLRCHAPPH KPGVLPFYVT  540
CSNRLACSEV REFEYRLGAY QEFGAANVSA TEMHLLERIE SLLSLGPVSS CHSSDSMEAA  600
KEKQSIVNKI ICMMEEENQQ MIERASGYDT SQCGVKEDLF LERKLKQNFY AWLVRQVTDD  660
GRGRTAIDDE GQGVLHLAAA LGYDWALKPI LASGVSVDFR DMNGWTALHW AAFYGREKTV  720
VGLVSLGASP GALTDPSAEF PLGRTPADLA SANGHKGISG FLAESSLTTH LSKLTVTDAK  780
EELASEVSGA KVGETVTERV AVTTTGDDMP DVLSLKDSLA AIRNATQAAA RIHQIFRVQS  840
FQRKQIIERS DNELSSDENA LSIVASRACK LGQNNGIAHA AATQIQKKFR GWNKRKEFLL  900
IRQKIVKIQA HVRGHQVRKK YKPIIWSVGI LEKVILRWRR KRSGLRGFRS EVVMNKPSIQ  960
DDSLPEDDYD FLKEGRKQTE VRMQKALARV KSMTQYPEGR AQYRRLLTAA EGLREVKQDG  1020
PTCILESPED TSYPEEELLD VENLLDDDTF MSIAFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OIT38290