PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38055

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 525aa MW: 58663.4 Da PI: 6.5199

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38055	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	164	213	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT38055 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*****************......55**********************997 PP
2	AP2	42.8	1.3e-13	256	306	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g OIT38055 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 306 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MECRQMWDLN DSPDRRRDDK SDEGCSSPIE QEGDDENGKR VGSISNSSSS AVAIDDISEE 60 EDGEKGKKKR NSPSNKIFGF SVMGPGNDDE EQPVTRQFFP VDESETGAPT NGPTNFPMAH 120 WVGVKFYQTE PLGNTGASKL MDVAQQQQQH PMKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYESDLK QMTNLTKEEF 240 VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA 300 AIKCNGKEAV TNFDPSIYEN ELNSAECSDN AADHNLDLSL GGSSSKQGNR ETGDSNTRVQ 360 NPSSMQFDVG WRQQGLRPEK QTAPVDMNAG RRENGYNESE TLQLLSQTHL HSPISLKPNN 420 NSQVQRFGQF MRPGESHMIQ MFPHQFSSSN YQVQFPSGSN GGRIGATNVE EISLSTSNIA 480 SSQWQSSYPP QIFAAAAASS GFPQQTVRPH ENWSSENGFL MRPSN

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MECRQMWDLN DSPDRRRDDK SDEGCSSPIE QEGDDENGKR VGSISNSSSS AVAIDDISEE  60
EDGEKGKKKR NSPSNKIFGF SVMGPGNDDE EQPVTRQFFP VDESETGAPT NGPTNFPMAH  120
WVGVKFYQTE PLGNTGASKL MDVAQQQQQH PMKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYESDLK QMTNLTKEEF  240
VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA  300
AIKCNGKEAV TNFDPSIYEN ELNSAECSDN AADHNLDLSL GGSSSKQGNR ETGDSNTRVQ  360
NPSSMQFDVG WRQQGLRPEK QTAPVDMNAG RRENGYNESE TLQLLSQTHL HSPISLKPNN  420
NSQVQRFGQF MRPGESHMIQ MFPHQFSSSN YQVQFPSGSN GGRIGATNVE EISLSTSNIA  480
SSQWQSSYPP QIFAAAAASS GFPQQTVRPH ENWSSENGFL MRPSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-121	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT38055