PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37954

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 342aa MW: 37978.4 Da PI: 6.0024

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37954	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.2	2.2e-05	11	43	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C ++H OIT37954 11 KLCDSCKTTSATVFCRADSAFLCLGCDCKIHAA 43 68****99***************999954 PP
2	zf-B_box	25.4	3e-08	53	95	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C +H+ H++ OIT37954 53 VWVCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHER 95 689*****************************65777777776 PP
3	CCT	69.9	6.6e-24	278	321	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ OIT37954 278 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 321 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MSSENWSLTA KLCDSCKTTS ATVFCRADSA FLCLGCDCKI HAANKLASRH ARVWVCEVCE 60 QAPASVTCKA DAAALCVTCD RDIHSANPLA RRHERFPVVP FYDSAVAKSH GGVNDDEKYF 120 DSHENNPQPE EEAEAASWIL PTPKEGTDNQ YKSADFLFND MDSYLDMDIM SCDQKPHNIL 180 QLHQQYSSDG VVPVQNKNES NHLQGPVVDG FPTYEMDFIG SKPYLYNFNS QSISQSVSSS 240 SMDVGVVPEH SAMADVSNSL VMNSSADTVP NPVSGLDREA RVLRYREKRK NRKFEKTIRY 300 ASRKAYAETR PRIKGRFAKR TEIEVDSLLA AADASYGVVP SF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MSSENWSLTA KLCDSCKTTS ATVFCRADSA FLCLGCDCKI HAANKLASRH ARVWVCEVCE  60
QAPASVTCKA DAAALCVTCD RDIHSANPLA RRHERFPVVP FYDSAVAKSH GGVNDDEKYF  120
DSHENNPQPE EEAEAASWIL PTPKEGTDNQ YKSADFLFND MDSYLDMDIM SCDQKPHNIL  180
QLHQQYSSDG VVPVQNKNES NHLQGPVVDG FPTYEMDFIG SKPYLYNFNS QSISQSVSSS  240
SMDVGVVPEH SAMADVSNSL VMNSSADTVP NPVSGLDREA RVLRYREKRK NRKFEKTIRY  300
ASRKAYAETR PRIKGRFAKR TEIEVDSLLA AADASYGVVP SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-101	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT37954