PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37945
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 887aa    MW: 98490.6 Da    PI: 6.5775
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37945genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23128229199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   ++++ +l++
  OIT37945 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI--WNEKNQLFL 224
               99*****************************85545444..8************************************************..8889999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OIT37945 225 GIRRA 229
               **997 PP
2Auxin_resp117.41.2e-38254337183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPr+++s+Fvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
    OIT37945 254 AAHAAATNSRFTIFYNPRSCPSDFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 337
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    
MRLSSAVSNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
AEAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKEA SFLPLDLGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPVQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SIIFIWNEKN QLFLGIRRAN RSQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RSCPSDFVVP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEVEPL  360
TTFPMYPSPF PLRLKRSWPP GFPALSGMKD DDMVMNPMMW LRDVGDGGTQ SINFQGIGVS  420
PWMQPRIDVP IGGMQMDIYQ AMAAGALQDL RSVDPSKQAL TSLLQLQQSN GVTNCTSGLL  480
YPQLFQQSQG QTAFLPSMAQ GQSQVQPVSQ PHIFQQQMLH QNSSNTIHQQ QQQSPQEQQP  540
PLQQQQAIRQ LDSSSQSQHT SSQAFYSTQQ ESFTDTNVNH STNSIVNPLH SLSGAVTRDE  600
PSQLVSVPRS SSLLSPTGWP PKRVAVDPVL PSASSQRMSP YIDQRGTPNK NVSQNALSFP  660
TFPGRDCPVG QEGNNDPHNH LLFGFNIDSP SLMQRDMRSL RGVGSDCEST NVPFASSNYL  720
SNAGNDFSQN PVMALSGCIT VPGFTQTSEN AGQESPHNTF VKVYKSGSFG RSLDITKFSS  780
YHELRSELAR MFGLEGLLED PLRSGWQLVF VDRENDVLLL GDDPWPEFVN SVWCIKILSP  840
HDVQQMGRQG LELLNSVSMS RSSNNSCDDF ANRSESRNIM SVATLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein