PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37787

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 473aa MW: 51852.1 Da PI: 6.4951

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37787	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1.1e-06	10	49	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 r C+ ++++ + l+C+ ++ lC C ++ H+ H OIT37787 10 RPCDFCNQQIAVLYCRADSAKLCLFCDQHVHSAnalskkH 49 78***************************99545555555 PP
2	zf-B_box	20.2	1.3e-06	52	93	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42 ++C++++++++++ C +++ lC++C H + H+++p+ OIT37787 52 SQICDNCGSEPVSICCATDNLVLCQECDWDAHGSceHDRTPV 93 579*************************995599998875 PP
3	CCT	64.1	4.2e-22	425	468	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ OIT37787 425 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 468 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MSQRSTGDSR PCDFCNQQIA VLYCRADSAK LCLFCDQHVH SANALSKKHI RSQICDNCGS 60 EPVSICCATD NLVLCQECDW DAHGSCEHDR TPVEGFSGCP CASELASAWG LDIEAKKPPT 120 PTHLQPTWNG FLEPCNWMCK DAIPPPSSVL LQDLMVPNAT NNNSGIYSTT CEVGRKQNPT 180 CGKQKQVLLK QLIELFKRDV ADGVGGGSED LVPKTPNGSS DWQGNVNVTE GSDAVMGGVN 240 QQLEPQSVPF TSLLMMQKPH NSKDSDRMVQ GDILSSGNSY VQNTQIWDFN LGQLRSHEQS 300 SSVEADYSES DMAYMMKSYG ELIKGTSLAT SKGLELSGIN CSVAHEDMTA FSNNSNNRGE 360 SQGPATSESN NLPIIKLSSD SGSAKRKCCG VSKDLNFMEQ SIFVGGENTG EEILKADMEL 420 LAKNRGNAMQ RYKEKKKTRR YDKHIRYESR KARADTRKRV KGRFVKANEA PDG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MSQRSTGDSR PCDFCNQQIA VLYCRADSAK LCLFCDQHVH SANALSKKHI RSQICDNCGS  60
EPVSICCATD NLVLCQECDW DAHGSCEHDR TPVEGFSGCP CASELASAWG LDIEAKKPPT  120
PTHLQPTWNG FLEPCNWMCK DAIPPPSSVL LQDLMVPNAT NNNSGIYSTT CEVGRKQNPT  180
CGKQKQVLLK QLIELFKRDV ADGVGGGSED LVPKTPNGSS DWQGNVNVTE GSDAVMGGVN  240
QQLEPQSVPF TSLLMMQKPH NSKDSDRMVQ GDILSSGNSY VQNTQIWDFN LGQLRSHEQS  300
SSVEADYSES DMAYMMKSYG ELIKGTSLAT SKGLELSGIN CSVAHEDMTA FSNNSNNRGE  360
SQGPATSESN NLPIIKLSSD SGSAKRKCCG VSKDLNFMEQ SIFVGGENTG EEILKADMEL  420
LAKNRGNAMQ RYKEKKKTRR YDKHIRYESR KARADTRKRV KGRFVKANEA PDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	5e-99	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT37787