PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37771
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 332aa    MW: 38728.4 Da    PI: 4.774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37771genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.73e-36321242103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk+ye+++d+++++++sws+ +nsf+v+d++++a ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ki+
      OIT37771  32 FLKKTYELVDDPSTNDVVSWSRGNNSFIVWDPQTLAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDH---------WEFANEGFLRGQKHLLKKIR 119
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
      OIT37771 120 RRKTS 124
                   **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MDHLGSIKEE FTFMSNMPQP MEGLHESGPP PFLKKTYELV DDPSTNDVVS WSRGNNSFIV  60
WDPQTLAINL LPRYFKHNNF SSFVRQLNTY GFRKVNPDHW EFANEGFLRG QKHLLKKIRR  120
RKTSNNSLHS AGNCNKASNQ GMEYSSCVEL GRFGLDGEID RLRRDKQVLM MELVNLRHHQ  180
QTTKSYLKSM EEKLIGTEMK QQQMMSFLAK AIQNPNFVQQ IMQEKDKRKE LEEEINKKRR  240
RPIDQGPSNI ENLNIKQELQ DYGDVYGFDD LELEEDDYVD QKAHIESGDK AINEGFWEDL  300
LNENIGEDEM ALLGIEEEDE EDMDVLSEHL GF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227241KRKELEEEINKKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-122HSF family protein