PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 145aa    MW: 15119.7 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37630genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132852125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              C+gCr+lL YP GA+sV+Ca+C++V
  OIT37630 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
              ************************9 PP

2zf-LSD146.84.8e-156791125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              CggC+tlL+Y rGA+sV+C++C+tV
  OIT37630 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
              ************************9 PP

3zf-LSD141.91.7e-13105129125
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
               Cg+Cr lL+Y +GA+sV+Ca+C++V
  OIT37630 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
               ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MPVPLAPYPT PPTPFTPPAS GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT AVGVSTSTTE QKLNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-67LSD family protein