PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37486

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 610aa MW: 65631.5 Da PI: 8.1171

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37486	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9.5e-25	237	281	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OIT37486 237 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVEG 281 79****************************************985 PP
2	QLQ	60.5	4.7e-21	168	204	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+L+an PvP++Ll +++k OIT37486 168 GPFTPSQWMELEHQALIYKHLVANIPVPHQLLIPLKK 204 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDFGGAMTME TIQESGNNIS KTVNSPTETN NSSKISNGSG QQLKQERSGP CDETNWRPSK 60 VQRAAADDYS ALCKQMPQQQ GPTNPTLFMR SGSPNNGRGH STMLSFSSPK SDELIPFLST 120 TNASVQDSSK SLAFPLFDPG SHYSRASAYA SGGSNESTHG PFVARFRGPF TPSQWMELEH 180 QALIYKHLVA NIPVPHQLLI PLKKSLNPYA FSGLSSGSYA SNWGWGTFHL GFTGNTDPEP 240 GRCRRTDGKK WRCSREAVPD QKYCERHINR GRHRSRKPVE GQNGHAVSGS TTSKVASVAP 300 SSSATVISSS GTSNSLGAVQ HQFNSLQPSA ANPSTEQLVS RMQDHKGVSM ISPTIGLKPK 360 DSAISIQKQH NGFELSSLSE FGLVSSDSLL NPSQRSSFVN PKSSNAFIDF NDQEQREQHP 420 VHHFIDGWTK EQSSRASASW PDELKSDWTQ LSMSIPMAAS DFSSSSNSPR QEKLTLSPLR 480 LSRDFDPIQM GLGVTNSHGE PMQKTANWLP VSWENALGGP LGEVLNSTAG NAGDAKNSSA 540 LNLATEMWDN SPPFGSSPTG VLQKSTFVSL SNSSSGGSPR SDSKKVHEGA GVCDEVIGST 600 LASSLCIPSM

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDFGGAMTME TIQESGNNIS KTVNSPTETN NSSKISNGSG QQLKQERSGP CDETNWRPSK  60
VQRAAADDYS ALCKQMPQQQ GPTNPTLFMR SGSPNNGRGH STMLSFSSPK SDELIPFLST  120
TNASVQDSSK SLAFPLFDPG SHYSRASAYA SGGSNESTHG PFVARFRGPF TPSQWMELEH  180
QALIYKHLVA NIPVPHQLLI PLKKSLNPYA FSGLSSGSYA SNWGWGTFHL GFTGNTDPEP  240
GRCRRTDGKK WRCSREAVPD QKYCERHINR GRHRSRKPVE GQNGHAVSGS TTSKVASVAP  300
SSSATVISSS GTSNSLGAVQ HQFNSLQPSA ANPSTEQLVS RMQDHKGVSM ISPTIGLKPK  360
DSAISIQKQH NGFELSSLSE FGLVSSDSLL NPSQRSSFVN PKSSNAFIDF NDQEQREQHP  420
VHHFIDGWTK EQSSRASASW PDELKSDWTQ LSMSIPMAAS DFSSSSNSPR QEKLTLSPLR  480
LSRDFDPIQM GLGVTNSHGE PMQKTANWLP VSWENALGGP LGEVLNSTAG NAGDAKNSSA  540
LNLATEMWDN SPPFGSSPTG VLQKSTFVSL SNSSSGGSPR SDSKKVHEGA GVCDEVIGST  600
LASSLCIPSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-113	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT37486