PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37427
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 332aa    MW: 36188.3 Da    PI: 4.9216
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37427genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63e-36251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
      OIT37427  25 FLTKTYQLVDDPAIDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRDIQ 112
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      OIT37427 113 RRKI 116
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MVPSSVEQTG ESTAGENQRS LPTPFLTKTY QLVDDPAIDE LISWNEDGTT FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGEKGLLRD IQRRKISPAG  120
TAVTAVSPTV AVNAAQTVTI AVAPAVRMVS PSNSGDEQVL SSNSSPAATA AAAAVLRTTT  180
CTTTPELLEE NERLRKENAQ LSQELNRLRS LCNNVYNLMS NYTGNPSETL AGIPEGRALE  240
LLPTGQLAAE MDGGATATPA ECSGVKAEED ISPRLFGVPI GVKRVRRSSE EESEREGRSQ  300
DQVQLHGSDV KSEPLDSGSG HHDGQPWIDR LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-88HSF family protein