PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37162

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 519aa MW: 56628.9 Da PI: 7.967

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37162	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.8	1.3e-11	159	183	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ OIT37162 159 GEKDCAHYMQTRTCKFGDSCKFDHP 183 7889********************8 PP
2	zf-CCCH	36.9	6.1e-12	208	234	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G+rCkF+H++ OIT37162 208 PGEPDCPYFMKTQKCKFGNRCKFNHPK 234 5789*********************96 PP
3	zf-CCCH	37.7	3.5e-12	257	281	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tGtCk+G++CkF+H++ OIT37162 257 EPSCAFYMKTGTCKFGATCKFHHPR 281 577********************96 PP
4	zf-CCCH	37.2	4.8e-12	331	357	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ OIT37162 331 PGEVDCPFYLKTGSCKYGGTCRYNHPE 357 57899********************96 PP
5	zf-CCCH	41.7	2e-13	411	434	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G+rCkF+H+ OIT37162 411 QIECDFYMKTGECKFGERCKFHHP 434 568********************9 PP
6	zf-CCCH	37.4	4.2e-12	468	489	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p OIT37162 468 CPYYMKTGMCKYGATCKFDHPP 489 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MANQLYGYNP SSNAGIAAGS NLSRTTTRSM DDYLSMDNNK TLLGSSSYFG SSGYSFSSPT 60 MLFNQSDSYN PSASKIPGLA AYQSSWTAPP GVDVAQPPAA DSYFSSLKRS SSDALYHRTL 120 LGARNTIGQA EAWFSANPLA KRPRFESASN LSIYPQRPGE KDCAHYMQTR TCKFGDSCKF 180 DHPIWVPEGG IPDWKEVPVI TESLPERPGE PDCPYFMKTQ KCKFGNRCKF NHPKDNTAHL 240 GSVQNSDVPV LPERPSEPSC AFYMKTGTCK FGATCKFHHP RDIQLPSPKQ ESGSAENPGS 300 ANNEMTEDVN LVKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHPERTA 360 AIGPALVASP ATHLNIGMVN PAASLLQNLD PRLTQTMLGL LPPVYPQRPG QIECDFYMKT 420 GECKFGERCK FHHPLDRSAP VVSAKDVQQP NVKLTLAGLP RREGAVHCPY YMKTGMCKYG 480 ATCKFDHPPP GEVLGMATSQ GASLSVEGED TLDVKEQQQ

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MANQLYGYNP SSNAGIAAGS NLSRTTTRSM DDYLSMDNNK TLLGSSSYFG SSGYSFSSPT  60
MLFNQSDSYN PSASKIPGLA AYQSSWTAPP GVDVAQPPAA DSYFSSLKRS SSDALYHRTL  120
LGARNTIGQA EAWFSANPLA KRPRFESASN LSIYPQRPGE KDCAHYMQTR TCKFGDSCKF  180
DHPIWVPEGG IPDWKEVPVI TESLPERPGE PDCPYFMKTQ KCKFGNRCKF NHPKDNTAHL  240
GSVQNSDVPV LPERPSEPSC AFYMKTGTCK FGATCKFHHP RDIQLPSPKQ ESGSAENPGS  300
ANNEMTEDVN LVKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHPERTA  360
AIGPALVASP ATHLNIGMVN PAASLLQNLD PRLTQTMLGL LPPVYPQRPG QIECDFYMKT  420
GECKFGERCK FHHPLDRSAP VVSAKDVQQP NVKLTLAGLP RREGAVHCPY YMKTGMCKYG  480
ATCKFDHPPP GEVLGMATSQ GASLSVEGED TLDVKEQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT37162