PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37137

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 588aa MW: 65621.4 Da PI: 8.4177

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37137	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.4e-19	57	100	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++vk++ g++Wk+Ia++m+ gRt+ qc +rwqk+l OIT37137 57 WTEEEDNLLTEVVKRFKGRNWKKIAECMN-GRTDVQCLHRWQKVL 100 ***************************.**********986 PP
2	Myb_DNA-binding	58.8	1.2e-18	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l OIT37137 106 KGPWSKEEDDLIIELVEKYGCKKWSFIAKSLP-GRIGKQCRERWHNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	51.4	2.5e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT++E+ l ++++ +G++ W+ Iar ++ gRt++ +k++w+ OIT37137 158 RDAWTEQEESVLCHYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MIQVKEESQT LDFGGFASCS SFSDSSYEAS TPRYSSEPGS SYRRSSGPTK RSSQAGWTEE 60 EDNLLTEVVK RFKGRNWKKI AECMNGRTDV QCLHRWQKVL NPELVKGPWS KEEDDLIIEL 120 VEKYGCKKWS FIAKSLPGRI GKQCRERWHN HLDPTIKRDA WTEQEESVLC HYHQIYGNKW 180 AEIARFLPGR TDNAIKNHWN SSVKKRSNLN LPSRLVLDTE SEGSPNFSSD KKKLEIKKHP 240 LQAQNAEQTI FLGEQTGLDN AAVALSTDLR IGYAYSAGNA LHKDTSLFGA CISAEENVRD 300 LIKPLGGIQF GKADVLPIGE TDKPCQSNLS RTKISYPLSA SSSDLHLDQL HHTRWSTSQV 360 EAVHPTTFGS MYESPKRSRH DTVNDPDHDF LSLSLASFTE VHSQSNKKNK AYDTQSSLGL 420 KQQGSLYYEP PQLKDLLIPL TDENLSRDNL IRQKNGHPFC STPPSLKLTV SANGSSPESV 480 LRNSAMSYTG TPSIIRKKNS RFPEAATHSS CTGTTTPTHN FPRASDREDT SNLKDRFSGC 540 KSSVSGKSLG RRLEYAFDME WDASRCCTPV SAASPCALRL GANTMLTP

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MIQVKEESQT LDFGGFASCS SFSDSSYEAS TPRYSSEPGS SYRRSSGPTK RSSQAGWTEE  60
EDNLLTEVVK RFKGRNWKKI AECMNGRTDV QCLHRWQKVL NPELVKGPWS KEEDDLIIEL  120
VEKYGCKKWS FIAKSLPGRI GKQCRERWHN HLDPTIKRDA WTEQEESVLC HYHQIYGNKW  180
AEIARFLPGR TDNAIKNHWN SSVKKRSNLN LPSRLVLDTE SEGSPNFSSD KKKLEIKKHP  240
LQAQNAEQTI FLGEQTGLDN AAVALSTDLR IGYAYSAGNA LHKDTSLFGA CISAEENVRD  300
LIKPLGGIQF GKADVLPIGE TDKPCQSNLS RTKISYPLSA SSSDLHLDQL HHTRWSTSQV  360
EAVHPTTFGS MYESPKRSRH DTVNDPDHDF LSLSLASFTE VHSQSNKKNK AYDTQSSLGL  420
KQQGSLYYEP PQLKDLLIPL TDENLSRDNL IRQKNGHPFC STPPSLKLTV SANGSSPESV  480
LRNSAMSYTG TPSIIRKKNS RFPEAATHSS CTGTTTPTHN FPRASDREDT SNLKDRFSGC  540
KSSVSGKSLG RRLEYAFDME WDASRCCTPV SAASPCALRL GANTMLTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	378	ESPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-79	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT37137