PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37059

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARR-B

Protein Properties

Length: 539aa MW: 60268.7 Da PI: 5.1689

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37059	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.8	7.7e-26	190	243	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ W+ eLHe+F++av+qL G ++A+Pk+ilelm+v+ L +ehv+SHLQkYRl OIT37059 190 KARVLWSAELHEKFLQAVNQL-GMDRAVPKKILELMNVPWLKREHVASHLQKYRL 243 689****************.******************************7 PP
2	Myb_DNA-binding	42.2	1.9e-13	194	242	3	48
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e++e++++av+qlG++ +k+I + m+ + ++++ s++qky+ OIT37059 194 LWSAELHEKFLQAVNQLGMDraVPKKILELMNvPWLKREHVASHLQKYR 242 6***********************************************7 PP
3	Response_reg	80.5	5.5e-27	11	119	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+vdD+p+ +++l+++l+k +y ev+++ +e al ll+e++ ++l++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga+ OIT37059 11 LLVVDDDPTCLKILEKMLKKCNY-EVTSCNRAEVALSLLRENKneFHLVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKNVVMKGVIHGAH 105 599******************.***********888889******************6654.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + OIT37059 106 DYLIKPVRIEALKN 119 ********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MSSIKFPTLR LLVVDDDPTC LKILEKMLKK CNYEVTSCNR AEVALSLLRE NKNEFHLVIS 60 DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DSKNVVMKGV IHGAHDYLIK PVRIEALKNI 120 WQHVVRKNQD EWKGKVFDQS EIVEDGEWPQ EPPEDVEYSS SANEVNLKNS KKRKEDDETE 180 ERDDMVALKK ARVLWSAELH EKFLQAVNQL GMDRAVPKKI LELMNVPWLK REHVASHLQK 240 YRLLLKKSMG VPQHQSGLNY SFIGHSEATF GTPPNGQLPA QSLATLWGAA LGQSATKSSL 300 YVPLVDQRNQ FSFENPKLRS QTQQQLNNSN KQVNLLYGIP TAVEPKQSLQ NGIVDNARGG 360 IYNHASQAYS AVDFSLNQNM QLRGSSFSAS SNSATSTLAT KGMLKEEVNI DIRGSRGFSP 420 NDDSFSEQYQ QTTQDWCLHN VGSTFDTSYH SSIQHGISSV EKSGQNINTP IAESVLSNGQ 480 ETGRVNLMDG SQLNSLLGGE PFGQEDLMSA FFEQQQQQSI GPVETAFGDD DDPLDNLPM

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MSSIKFPTLR LLVVDDDPTC LKILEKMLKK CNYEVTSCNR AEVALSLLRE NKNEFHLVIS  60
DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DSKNVVMKGV IHGAHDYLIK PVRIEALKNI  120
WQHVVRKNQD EWKGKVFDQS EIVEDGEWPQ EPPEDVEYSS SANEVNLKNS KKRKEDDETE  180
ERDDMVALKK ARVLWSAELH EKFLQAVNQL GMDRAVPKKI LELMNVPWLK REHVASHLQK  240
YRLLLKKSMG VPQHQSGLNY SFIGHSEATF GTPPNGQLPA QSLATLWGAA LGQSATKSSL  300
YVPLVDQRNQ FSFENPKLRS QTQQQLNNSN KQVNLLYGIP TAVEPKQSLQ NGIVDNARGG  360
IYNHASQAYS AVDFSLNQNM QLRGSSFSAS SNSATSTLAT KGMLKEEVNI DIRGSRGFSP  420
NDDSFSEQYQ QTTQDWCLHN VGSTFDTSYH SSIQHGISSV EKSGQNINTP IAESVLSNGQ  480
ETGRVNLMDG SQLNSLLGGE PFGQEDLMSA FFEQQQQQSI GPVETAFGDD DDPLDNLPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-123	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OIT37059