PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36927

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 392aa MW: 45064.2 Da PI: 4.3134

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36927	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.5e-12	56	140	1	84
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l dv +s+ +++ kk ae+h + + esk+l + d +g+ +++ +r + g y+l++GW+++ ++++L+ gD+++ + OIT36927 56 FCKFLCETDVRESCSVSIEKKDAEDHfpCLAPGESKMLEFADCRGNNIAMEF-VRTNFGDYYLRSGWERYRDEHKLEHGDVLTVYK 140 8999**********************66788999************.6888899********************9983 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MMNAEYPEKV EEEEKQLEVE NGSRKQNSTS ISASGENDSP QENVIEIPLE YNNIVFCKFL 60 CETDVRESCS VSIEKKDAED HFPCLAPGES KMLEFADCRG NNIAMEFVRT NFGDYYLRSG 120 WERYRDEHKL EHGDVLTVYK IEIQKKYFYI IDCNKLTPED LQDDVVQDNV QLVITKLIAT 180 LQDPNASIVE EPVLAKNLRY KDLYENSNGI KLELPKKEVE ENLHDLPLPQ VGGQVILPLF 240 DPIGKEVIQM ELVHTEQDEY YFGGREWEEY AAKHGLLIFD TVFVNKVTVN RDELNPSAEC 300 IWEKIIDQTG KLDDQFVNNS YYYQISYQLR SVKSNKKPKY ELGQTENTTS APSSTTTTTA 360 GNSNDRKGKG VAIPQSEPEY DSDDAYWLSY RD

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MMNAEYPEKV EEEEKQLEVE NGSRKQNSTS ISASGENDSP QENVIEIPLE YNNIVFCKFL  60
CETDVRESCS VSIEKKDAED HFPCLAPGES KMLEFADCRG NNIAMEFVRT NFGDYYLRSG  120
WERYRDEHKL EHGDVLTVYK IEIQKKYFYI IDCNKLTPED LQDDVVQDNV QLVITKLIAT  180
LQDPNASIVE EPVLAKNLRY KDLYENSNGI KLELPKKEVE ENLHDLPLPQ VGGQVILPLF  240
DPIGKEVIQM ELVHTEQDEY YFGGREWEEY AAKHGLLIFD TVFVNKVTVN RDELNPSAEC  300
IWEKIIDQTG KLDDQFVNNS YYYQISYQLR SVKSNKKPKY ELGQTENTTS APSSTTTTTA  360
GNSNDRKGKG VAIPQSEPEY DSDDAYWLSY RD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-07	RAV family protein

Link Out ? help Back to Top
Ensembl	OIT36927