PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36852

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 515aa MW: 57214.6 Da PI: 6.6179

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36852	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.7e-10	155	211	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+ ++ a++k++g OIT36852 155 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARSYDLAALKYWG 211 57*****************5444.2455536655.779999************98 PP
2	AP2	50.9	3.8e-16	256	305	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+fgt+eeAa+a++ a+ k++g OIT36852 256 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDVAAIKFRG 305 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MNSNNWLSFH LSPTHPSLGL VTETIDNPFQ NQEWNFTDTG GSEVPKVADF LGVSKSGHES 60 ELVSYSEIQA NDNSGYLFPN TNLMPMQNVT YDLQENACNM QSLTLSMGSG KSSTSETSAS 120 PSANATARAS CTSGENSIVE AAPRRTSDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR 180 EGQSRKGRQG GYDKEEKAAR SYDLAALKYW GTSTTTNFPI NNYEKEVEEM KHMTRQESIA 240 SIRRKSTGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTEE EAAEAYDVAA 300 IKFRGLGAVT NFEMNRYDVK AILESNTLPI GGGAAKRLKE AQAFESSRKR DQEMISLNST 360 TTFHQYENSN NSGVAFQTYP LMQQQPLLTT LQNQDFSSQF HQSYIQRQLQ LHHQQSHQMY 420 NNYLQSNNPV FLHGLMNSSS VMDNNGGSSS GSYSNGGYLD NTTGIGMTSN SPSGGGSAHE 480 EIAMVKVDYD MPYTGWSGES SVQESNPGGF NMWND

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MNSNNWLSFH LSPTHPSLGL VTETIDNPFQ NQEWNFTDTG GSEVPKVADF LGVSKSGHES  60
ELVSYSEIQA NDNSGYLFPN TNLMPMQNVT YDLQENACNM QSLTLSMGSG KSSTSETSAS  120
PSANATARAS CTSGENSIVE AAPRRTSDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  180
EGQSRKGRQG GYDKEEKAAR SYDLAALKYW GTSTTTNFPI NNYEKEVEEM KHMTRQESIA  240
SIRRKSTGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTEE EAAEAYDVAA  300
IKFRGLGAVT NFEMNRYDVK AILESNTLPI GGGAAKRLKE AQAFESSRKR DQEMISLNST  360
TTFHQYENSN NSGVAFQTYP LMQQQPLLTT LQNQDFSSQF HQSYIQRQLQ LHHQQSHQMY  420
NNYLQSNNPV FLHGLMNSSS VMDNNGGSSS GSYSNGGYLD NTTGIGMTSN SPSGGGSAHE  480
EIAMVKVDYD MPYTGWSGES SVQESNPGGF NMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-178	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT36852