PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36841

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 527aa MW: 59738.4 Da PI: 7.1662

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36841	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53	8.3e-17	165	214	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT36841 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 214 78*****************......55**********************997 PP
2	AP2	42.6	1.5e-13	257	307	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ k +g OIT36841 257 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEVEAARAYDKAAIKCNG 307 89******.7**...5...334336******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MWNLNDSPHN LRGDESEEGD YYEKGRGVGS ISNSSSSAVD NNIEEYGSEE EEEEDNNGQK 60 GKKKRTTNPS KIFGFSMIAP GNDDNLSSES QPPVTRQFFP VDELEIGAAA DFDDRSSRFP 120 RAHWAGVKFY HSETSGNLPV GKGAELSQQV QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE 180 SHIWDCGKQV YLGGFDTAHT AARAYDRAAI KFRGVEADIN FNLEDYEDDL KQMRNLTKEE 240 FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQLLGK KYVYLGLFDT EVEAARAYDK 300 AAIKCNGKDA VTNFDLSIYE NELNSAECTN YKAADHSLDL SLGGASSKQS SREMEDNNNN 360 RDKSSSMQFE ADWRHHGLRP KHQTSPIDVD ARGRDGYNES ETLQLLSKTH LHFPGSFNPN 420 NNEMQRFDQY MRAGESQMIQ MTFPPQFNSS NYHIQFPSSS NGVRIGATNR RDVSFSSSDS 480 QQWQSNNILH PQQLATAAAS SGFPQQILRH QNWSHKNGYH YSLMRPS

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MWNLNDSPHN LRGDESEEGD YYEKGRGVGS ISNSSSSAVD NNIEEYGSEE EEEEDNNGQK  60
GKKKRTTNPS KIFGFSMIAP GNDDNLSSES QPPVTRQFFP VDELEIGAAA DFDDRSSRFP  120
RAHWAGVKFY HSETSGNLPV GKGAELSQQV QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHT AARAYDRAAI KFRGVEADIN FNLEDYEDDL KQMRNLTKEE  240
FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQLLGK KYVYLGLFDT EVEAARAYDK  300
AAIKCNGKDA VTNFDLSIYE NELNSAECTN YKAADHSLDL SLGGASSKQS SREMEDNNNN  360
RDKSSSMQFE ADWRHHGLRP KHQTSPIDVD ARGRDGYNES ETLQLLSKTH LHFPGSFNPN  420
NNEMQRFDQY MRAGESQMIQ MTFPPQFNSS NYHIQFPSSS NGVRIGATNR RDVSFSSSDS  480
QQWQSNNILH PQQLATAAAS SGFPQQILRH QNWSHKNGYH YSLMRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-120	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT36841