PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36472

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 312aa MW: 33744.4 Da PI: 7.5479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36472	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OIT36472 137 YECKTCNRTFPSFQALGGHRTSH 159 99*********999998888777 PP
2	zf-C2H2	13.7	0.00019	216	238	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H OIT36472 216 HECSICGAEFSSGQALGGHMRRH 238 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MEISEDSADR TLVFKGKRSK RPRQLSLVGM TVAVTSTSST GGGGAGGGSG GSSDDIGGGG 60 EFYSSSIQYS PTTSSTQIST SSEEDEDMAN CLILLAQSGR CQKLQVESSE RKMVKISSRK 120 FTEMATCTTG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KAKTIVEDKK STADSENHDH 180 RYHQDEEKLN KIITTPTQIV NKGHSNGNFN SKPKIHECSI CGAEFSSGQA LGGHMRRHRP 240 PPTITATNST KITDETTSES SHDDENSKEK PRIILSLDLN LPAPPEDDSK FGFSANKQSL 300 VFSPAALVDC HY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-51	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT36472