PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36270
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 311aa    MW: 34948.2 Da    PI: 7.0914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36270genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.69.1e-4371061100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l  +k+e
  OIT36270   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQHKLRQVQDDLLNAKKE 106
               7********************************************************************************************9888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNAAQR  60
EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ HKLRQVQDDL LNAKKELATY IGPSAMLPIL  120
QPQGFLQPHH MNNPSSSTMM PFNMNPMLGM PTGVPHGGQL MIRDPQQQQT IEAQQLAAAM  180
AAREQQEMLR NYELQQQQQQ QQQHPSQQQD IVRFNSGFDS TGSVTATGFH QMSSSPISAS  240
LALGSYENNP YNLIQQPQQE QNNPHHHQQI HLQPQLLLQQ QQQQTPQQPE TPRQQQRAKS  300
EEEGRSVGPS C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.18e-83LBD family protein