PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36270

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 311aa MW: 34948.2 Da PI: 7.0914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36270	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.6	9.1e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l +k+e OIT36270 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQHKLRQVQDDLLNAKKE 106 7********************************************************************************************9888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ HKLRQVQDDL LNAKKELATY IGPSAMLPIL 120 QPQGFLQPHH MNNPSSSTMM PFNMNPMLGM PTGVPHGGQL MIRDPQQQQT IEAQQLAAAM 180 AAREQQEMLR NYELQQQQQQ QQQHPSQQQD IVRFNSGFDS TGSVTATGFH QMSSSPISAS 240 LALGSYENNP YNLIQQPQQE QNNPHHHQQI HLQPQLLLQQ QQQQTPQQPE TPRQQQRAKS 300 EEEGRSVGPS C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-83	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT36270