PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36247
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 408aa    MW: 46266.3 Da    PI: 4.8722
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36247genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124e-35141062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkelleki 97 
                   Fl+k+ye+++d++ + ++sws++++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++  F +g+ +ll++i
      OIT36247  14 FLTKTYEMVDDPSSDAIVSWSSSNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDnFVRGQPHLLKNI 101
                   9****************************************************************999.........*****988************ PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                   +r+k 
      OIT36247 102 HRRKP 106
                   **985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MDEATCSTNA LPPFLTKTYE MVDDPSSDAI VSWSSSNKSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDNF VRGQPHLLKN IHRRKPVHSH SAQNLHGLSS  120
PLTESERQGY KEDIQKLKHE NESLHLDLQR HQQDRQGLEL QMQVFTERVQ HVEHRQKTML  180
SALARMLDKP VTDLSCMPQL QVNDRKRRLP GNSCLFNETD LEDTRAISSR ALTWENMNPS  240
SLLTINAELL DQLDSSLTFW ENVLQDVDQA RIQQNCSLEL DESTSCADSP AISYTQLNVD  300
VGPKASDIDM NSEPNANTNP EVAAPEDQAA VAGTTTNVPT GVNDVFWEQF LTENPGSVDA  360
SEVQSERKDI GNKKNESKPV DGGKFWWNMK SVNSLAEQLG HLTPAEKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-117HSF family protein