PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35841

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 507aa MW: 54756.7 Da PI: 5.6951

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35841	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	193	237	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W++I+r++ Rt+ q+ s+ qk+ OIT35841 193 AWTAEEHRLFLQGLEKYGRGDWRSISRHFVVSRTPTQVASHAQKF 237 7******************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MEDEIAFSHY SVLEKNISKR PAILCCYAMK CQPRATLQRC PLPPAGTVIR SSTPSRNSSS 60 TMGSELFNSV TTVPKGKFSG LTSGGPSIAS VMQLATALVK TCNSSSWTKE EDRAFETALA 120 IYAGDSDQLM KIAAAVPRKS IPEILQHYKK LVDDINDIEA GKVPLPRYGR MQGCSSRRSR 180 LSGAEVERRK GVAWTAEEHR LFLQGLEKYG RGDWRSISRH FVVSRTPTQV ASHAQKFFSR 240 LKDNNKAKRR RSIHDITTVD AGTTEPSQGQ ETEKLNGPCG GQLQWPITDY VTEAFDTGMF 300 PLPGPVTNCM IDAIGGPSSV NPETFPFGTA VVSELNSSLP NVDDEFLLGV EDLITVPTQG 360 TSEAWRGVDT PSLSWQPSFA GGTGMYTHPV SSVGYEMEEL ITKELVEATQ VGPIVNTARL 420 PLPIADHIGV HGCTASSSGA KNGFESTVGA REAGLSVDSD PLLSIAGTSG GGVYPSFNAS 480 IKDDNIFDLE DLFLDPMIGF YEKEGKS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MEDEIAFSHY SVLEKNISKR PAILCCYAMK CQPRATLQRC PLPPAGTVIR SSTPSRNSSS  60
TMGSELFNSV TTVPKGKFSG LTSGGPSIAS VMQLATALVK TCNSSSWTKE EDRAFETALA  120
IYAGDSDQLM KIAAAVPRKS IPEILQHYKK LVDDINDIEA GKVPLPRYGR MQGCSSRRSR  180
LSGAEVERRK GVAWTAEEHR LFLQGLEKYG RGDWRSISRH FVVSRTPTQV ASHAQKFFSR  240
LKDNNKAKRR RSIHDITTVD AGTTEPSQGQ ETEKLNGPCG GQLQWPITDY VTEAFDTGMF  300
PLPGPVTNCM IDAIGGPSSV NPETFPFGTA VVSELNSSLP NVDDEFLLGV EDLITVPTQG  360
TSEAWRGVDT PSLSWQPSFA GGTGMYTHPV SSVGYEMEEL ITKELVEATQ VGPIVNTARL  420
PLPIADHIGV HGCTASSSGA KNGFESTVGA REAGLSVDSD PLLSIAGTSG GGVYPSFNAS  480
IKDDNIFDLE DLFLDPMIGF YEKEGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	9e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT35841