PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35671
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 289aa    MW: 30698.7 Da    PI: 9.7047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35671genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.3e-0997122227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               k +lC+ +     Ck+Gd+C+FaH++
  OIT35671  97 KSKLCSKYNTAEGCKFGDKCHFAHSE 122
               678*********************95 PP
2zf-CCCH32.11.9e-10256280126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt+ C++f++ G C +G++C+FaHg
  OIT35671 256 FKTKMCSNFSK-GSCTFGEKCHFAHG 280
               69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEFGRKRIVD GAFAGNGGMK KSRNESESFT SGVRSKSKPC MKFYSTSGCS YGEGCHFLHY  60
VPGYSAMNQI SNMGSNPAVP VGRNRAPFSD GPAPTMKSKL CSKYNTAEGC KFGDKCHFAH  120
SEMEIGKLVA PAYDDFQAAG PPSRFPGYHK PSQPSPAATN FGASATTTIS IDGALAGTII  180
GRNGVNSKQI CRLTGVKLSI KEHETDSNRR NIELQGTFDQ INQASAMVRD IISNVGAPTG  240
GPKNTGPFAR GPAGPFKTKM CSNFSKGSCT FGEKCHFAHG ASELQKPLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-66C3H family protein