PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35648

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 670aa MW: 73866.5 Da PI: 6.3424

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35648	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.6	4.2e-15	255	314	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g OIT35648 255 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 314 57*****************666664478446***********************98 PP
2	AP2	46.8	7.6e-15	357	408	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OIT35648 357 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 408 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MAMNNWLGFS LSAHEELTSQ TSQEISGSVD VSGECFDLTS HHDDSTLPSL NVVPHNTPFG 60 IFEAFNRNHQ SQDWSSHDPN YKTTSEMSML MGSSCNTIQH LENQEPPKLE NFLGIGEVQN 120 NNNNINGDYS IYSSVTNTTN NIGSNTNNNT IGLSMIKNWL RNNPNTTTPS ENDKKEGEGV 180 VVGGGNNAQS LSLSMSTGDG GGGGGGGGGE NSCSSENNKQ QENANGTNGS IDVQNNGAIE 240 AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV YLGGYDKEEK 300 AARAYDLAAL KYWGPTTTTN FPISNYEKEL EEMKHMTRQE YVASLRRKSS GFSRGASIYR 360 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFEINRY 420 DVKSILESST LPIGGAAKRL KDAEQADQIA LDYQRVSQET IGSHLTNGTI SSYGANANHI 480 WSNIAFQQAQ PLNMHYPYSQ QQQQQQQRLW CKQEVQDSDH LSSTHNFQDF HQLQHGNIAH 540 NFMQPTSALH NLMGLDTSST SMEHNNVTYQ GVGYASSPSG GFVLPQLSQG NGYGENEVKQ 600 QLGNENIFGY YHSQQSTSNG SVKAAGLYDQ QESVNCNNWM STAVPALASR NNTVAICHGG 660 PPTFTVWNDT

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MAMNNWLGFS LSAHEELTSQ TSQEISGSVD VSGECFDLTS HHDDSTLPSL NVVPHNTPFG  60
IFEAFNRNHQ SQDWSSHDPN YKTTSEMSML MGSSCNTIQH LENQEPPKLE NFLGIGEVQN  120
NNNNINGDYS IYSSVTNTTN NIGSNTNNNT IGLSMIKNWL RNNPNTTTPS ENDKKEGEGV  180
VVGGGNNAQS LSLSMSTGDG GGGGGGGGGE NSCSSENNKQ QENANGTNGS IDVQNNGAIE  240
AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV YLGGYDKEEK  300
AARAYDLAAL KYWGPTTTTN FPISNYEKEL EEMKHMTRQE YVASLRRKSS GFSRGASIYR  360
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFEINRY  420
DVKSILESST LPIGGAAKRL KDAEQADQIA LDYQRVSQET IGSHLTNGTI SSYGANANHI  480
WSNIAFQQAQ PLNMHYPYSQ QQQQQQQRLW CKQEVQDSDH LSSTHNFQDF HQLQHGNIAH  540
NFMQPTSALH NLMGLDTSST SMEHNNVTYQ GVGYASSPSG GFVLPQLSQG NGYGENEVKQ  600
QLGNENIFGY YHSQQSTSNG SVKAAGLYDQ QESVNCNNWM STAVPALASR NNTVAICHGG  660
PPTFTVWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-141	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT35648