PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35554

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 312aa MW: 34585.2 Da PI: 8.0844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35554	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.7e-14	107	158	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ OIT35554 107 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 158 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MALEALCSNE LVNFIISATP FTSNNLDPST SENATLLLDH QNGLSQHFCG HHEQQYSTAS 60 VPETTTTTTP TRREKNLSVA QGGGGGGRKK RRRRPKVCKN KEEAENQRMT HIAVERNRRK 120 QMNEHLAVLR SLMPESYVQR GDQASIVGGA IEFVKELEHI VQSLEAQKFV QLQQGGGDGE 180 GPTVAGKYFP TPFAQFFSYP QYTCCQLPNK YTSKSKAAIA DIEVTLIETH ANVRILSRRR 240 FRQLSKLVAA FQSLYLSVLH LNVTTLDPLV LYSISAKVEE GCQLNSADDI AGAVHHMLRI 300 IEEEAATLSC QA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	94	RKKRRRR
2	89	94	KKRRRR
3	108	119	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-78	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT35554