PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35355

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 537aa MW: 55795.9 Da PI: 8.6914

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35355	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIT35355 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.4	0.00011	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + OIT35355 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MPADPDNSSA MNDSTGSGEV SVSSSGNQAP PQKESAKKKR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKRVYVCP ETTCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DVLAQESAKA VPEKPPNVTN EEPKTQATAA SSSPPPTPTA SPPAAESQPP 240 PPPAALPPPA APKTLTPAAI PPSTTVISFV SSVQNPELRE NPNPNSTGTA GKQVMEETTA 300 LASLTGSCSS SSSSCSNGSS SSNVFGSLFA SSTASGSLPS QAPGFTDLFR AVAPERVPEM 360 APPSSAEPIS LCLAMSHGSS IFRPAGQERR QYAPVPQPAM SATALLQKAA QMGAAATSSS 420 LLRGLGVMSS SSPSNGQQEW SGRPMETNGA SLAAGLGLGL PCDAGSGLKE LMLGTPSVFG 480 PKHPTLDLLG LGMAASGGPS PGLSALLTSM GSNLDMATAA GSFGSGDFSG KDLGRNS

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MPADPDNSSA MNDSTGSGEV SVSSSGNQAP PQKESAKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKRVYVCP ETTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DVLAQESAKA VPEKPPNVTN EEPKTQATAA SSSPPPTPTA SPPAAESQPP  240
PPPAALPPPA APKTLTPAAI PPSTTVISFV SSVQNPELRE NPNPNSTGTA GKQVMEETTA  300
LASLTGSCSS SSSSCSNGSS SSNVFGSLFA SSTASGSLPS QAPGFTDLFR AVAPERVPEM  360
APPSSAEPIS LCLAMSHGSS IFRPAGQERR QYAPVPQPAM SATALLQKAA QMGAAATSSS  420
LLRGLGVMSS SSPSNGQQEW SGRPMETNGA SLAAGLGLGL PCDAGSGLKE LMLGTPSVFG  480
PKHPTLDLLG LGMAASGGPS PGLSALLTSM GSNLDMATAA GSFGSGDFSG KDLGRNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT35355