PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT35215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 30681.9 Da PI: 9.811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H OIT35215 36 KSKPCTKFFSTAGCPFGENCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 29.8 | 1e-09 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ OIT35215 97 KTKLCNKYNTAEGCKFGDKCNFAHGE 122 8***********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.8e-12 | 260 | 284 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg OIT35215 260 FKTKLCENFAK-GSCTFGDRCHFAHG 284 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence |
MDNRKRNRND AGANVNGGVK KYKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGENCHFLHY 60 VPGGYNAVAQ MMKMVPALSS RNTAAPPMSN GNASSVKTKL CNKYNTAEGC KFGDKCNFAH 120 GEWEIGKPIM PSQEDPRAMG VGPVPGRFGG RIEPAVSGPA ASFGTSATAK ISVDASLAGA 180 IIGKGGVHSK QICRQTGAKL AIRDHETDKN LRNIELEGTF EQISQASAMV RELINSLGSV 240 GGPGRTPAIP GGAAPPGSNF KTKLCENFAK GSCTFGDRCH FAHGAAELRK TGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT35215 |