PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35180

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 417aa MW: 47082 Da PI: 9.4918

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35180	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OIT35180 54 YVCEICNQGFQRDQNLQMHRRRH 76 9*********************9 PP
2	zf-C2H2	15.5	4.8e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ OIT35180 131 WVCDKCSKGYAVQSDYKAHLKTC 153 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MLSINKPNSS SDPFTSSENG NNCNRRKRRP AGTPDPDAEV VSLSPKTLLE SDQYVCEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCDKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS 180 FSRLGSDSKS LQPTACLSRT ASSPTPSSDT NLTTVPWPSF LISNKPKPFM KNDVKQHNLE 240 LQLLTTTTTT SSSSPFDISV SSKPNDSHST HLQLSIGSSD FNEKNDSEND THKSRNGSNL 300 DVALRLKDEA RERLRQAMAE KAYAEEARKQ AKRQIELAEQ EFANAKRIRR QAQGELEKAQ 360 ALKEQAIRQI NSTLSQITCH VCKQQFQAKR IATTSVVPSY DMRLSHISSS GLTEHEM

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MLSINKPNSS SDPFTSSENG NNCNRRKRRP AGTPDPDAEV VSLSPKTLLE SDQYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCDKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS  180
FSRLGSDSKS LQPTACLSRT ASSPTPSSDT NLTTVPWPSF LISNKPKPFM KNDVKQHNLE  240
LQLLTTTTTT SSSSPFDISV SSKPNDSHST HLQLSIGSSD FNEKNDSEND THKSRNGSNL  300
DVALRLKDEA RERLRQAMAE KAYAEEARKQ AKRQIELAEQ EFANAKRIRR QAQGELEKAQ  360
ALKEQAIRQI NSTLSQITCH VCKQQFQAKR IATTSVVPSY DMRLSHISSS GLTEHEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-146	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT35180