PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34939
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 245aa    MW: 27141.2 Da    PI: 8.9891
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34939genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.22.1e-31169225158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF
   OIT34939 169 QEPVFVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 225
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MQSKSKSAIC REARTFDVPN SIKYSEPWWN TAGYNPVSLG LMRESASDSS SREQSVDGRS  60
QSDGGANEED DDAPENSQST IPMHSDGERS YPQVDQNLQP IASTIPPKGD GTQIQPGQLE  120
LVTRSIACAP NVYADPYYGG MMTPFGQPMV PHVFDMHHPR MPLPHEMAQE PVFVNAKQYH  180
GILRRRESRA KAELEKKLIK VRKPYLHESR HQHALKRARA SGGRFAKKSD TDTSKGTGSG  240
SGSKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.21e-44NF-YA family protein