PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34841
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 214aa    MW: 24909 Da    PI: 9.0643
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34841genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.88.6e-34398195
    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
              aCa+Ck++r++C+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e+  r++a++slv+eA +r++dPv G +g ++++ ++l+  k++ +
  OIT34841  3 ACASCKHQRKRCTEKCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDYdRRKAVESLVWEAFCRQKDPVFGPFGEYKRIYEELKLYKSQYQ 98
              7************************************************88777**********************************99998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
TAACASCKHQ RKRCTEKCVL APYFPAEKSR EFKAVHKVFG VSNITKIVKN LKEDYDRRKA  60
VESLVWEAFC RQKDPVFGPF GEYKRIYEEL KLYKSQYQQI LQMPISQGSN NNGIVYEATT  120
QGLINGWNIN KRNDNNLLYI NENSTVESWS SYNNKNNPLH HHVQNIEKLR TENSNGSTVI  180
VPQPQAYNEF NQQYFLAGQY NPIDSKSRES MLWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-43LBD family protein