PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34619
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 514aa    MW: 56908.6 Da    PI: 4.526
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34619genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.1e-36301212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sw  ++nsfvv+d+ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
      OIT34619  30 FLVKTYDMVDDPSTDKIVSWGPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVEPDR---------WEFANEGFLRGQKHLLRNIS 117
                   9********************999******************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      OIT34619 118 RRKP 121
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    
MGSTSGDAGG GGYPAQAPAP MPSANAPPPF LVKTYDMVDD PSTDKIVSWG PTNNSFVVWD  60
PPEFAKDLLP KYFKHNNFSS FVRQLNTYGF RKVEPDRWEF ANEGFLRGQK HLLRNISRRK  120
PAHGHTQQQL HGQSASVGAC VEVGKFGLEE EVERLKRDKN VLMQELVKLR QQQQTTDNQM  180
QTMVQSLQVM EQRQQQMMSF LAKVVNSPGF LAQFVQQQND SNRRAMEGNK KRRIKQDFPS  240
DDLSVSPADG QIVKYQPVMN EAAKAILRQI MQQDSSPRLD NLRNSPESVL ICDGSPQSNA  300
LDSGSSNRVS GVTLQEVPPT SAQPFASATS AVAGQSSSAS TSEIQSSPLC KSFEIADIQF  360
SDMRSLVGGN DLPPVSLSPS DMTMPELSQI QEIVPVNNMD TDGSEMENGS FVDPTLDGNG  420
NLPLGIDTFS PDPQNEWRST LMDDIGELPN LGDPFWEKLL QSPLPTETEE MDSVEIEDIK  480
TTETEPLKNG WDKAQHMEHL TEQMELLTSN SKKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229236NKKRRIKQ
2230235KKRRIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-124HSF family protein