PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34420

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 546aa MW: 59983.4 Da PI: 8.5483

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34420	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.2	1.3e-17	251	300	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f +Lre++P++ ++K +Ka+ L ++veYI+ Lq OIT34420 251 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVVEYIQFLQ 300 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGYLK THDFLQPLEQ ARKTVGKAET 60 KVEVEATEKP PSAAHILPGG IGTYSISYLQ QRIPTPETNI FAVTQASSTD REDRNSNCSS 120 YSGSGFAIWN ESAIKKGKTG KENVAGDRHV VRDVNIGGGQ PTTSLERQSQ LSSNHNHNTA 180 TLSTLSSAQQ SSAVENQSFL KMMKSANNAH EEDDDEEEEF IVKKESPSHS RSDLSVKVDG 240 KSSDQKPNTP RSKHSATEQR RRSKINDRFL KLREIIPHSD QKRDKASFLL EVVEYIQFLQ 300 EKVHTYEGSY QGSESKPSTL PWNKCQRMTQ GFIDQSQGTN SASTPAIICA GKFDESKIAI 360 SATSPVNGQT LEPNRISAVK QSSQQSELTN KTATLCKQPN AFPFCGSTSI ASLQSRPAPD 420 ADSLELKSQS QFWLSRSNMT DCAVTNDKLK GQEVSIEGGT ISISSVYSQR LLNTLKQALQ 480 NSGVDLSQAN MSVKIDLGKR ANDSLNASVS NFKGDNISTS NRSNPQLIDS STREESVHAF 540 KRLKTS

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGYLK THDFLQPLEQ ARKTVGKAET  60
KVEVEATEKP PSAAHILPGG IGTYSISYLQ QRIPTPETNI FAVTQASSTD REDRNSNCSS  120
YSGSGFAIWN ESAIKKGKTG KENVAGDRHV VRDVNIGGGQ PTTSLERQSQ LSSNHNHNTA  180
TLSTLSSAQQ SSAVENQSFL KMMKSANNAH EEDDDEEEEF IVKKESPSHS RSDLSVKVDG  240
KSSDQKPNTP RSKHSATEQR RRSKINDRFL KLREIIPHSD QKRDKASFLL EVVEYIQFLQ  300
EKVHTYEGSY QGSESKPSTL PWNKCQRMTQ GFIDQSQGTN SASTPAIICA GKFDESKIAI  360
SATSPVNGQT LEPNRISAVK QSSQQSELTN KTATLCKQPN AFPFCGSTSI ASLQSRPAPD  420
ADSLELKSQS QFWLSRSNMT DCAVTNDKLK GQEVSIEGGT ISISSVYSQR LLNTLKQALQ  480
NSGVDLSQAN MSVKIDLGKR ANDSLNASVS NFKGDNISTS NRSNPQLIDS STREESVHAF  540
KRLKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-91	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT34420