PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34412

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 500aa MW: 56790.6 Da PI: 7.864

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34412	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.5	8.7e-29	64	147	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r++m+ ++r+++lk+plW+e+s++m e g++r++k+C+ek+en+ k++k++k+g+++r ++ +++++f+qle OIT34412 64 RWPHDETLALLKIRSQMDLAFRDSNLKGPLWDEISRNMGELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 147 8******************************************************************97..56668****97 PP
2	trihelix	91.4	9.7e-29	361	446	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r++++ ++++ g+ k plWe++s m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e+s+tcpyf+ l+ OIT34412 361 RWPKAEVEALIKLRTNVDLQYQDnGSPKWPLWEDISTGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PEDSKTCPYFHLLD 446 8*******************747999**************************************97.9********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MLETSVLLEN SATAAAGGGA VTQVVELSND GGGGGGSVGG GSEEEERSRG EIEGEKNNIS 60 GGNRWPHDET LALLKIRSQM DLAFRDSNLK GPLWDEISRN MGELGYNRNA KKCREKFENI 120 YKYHKRTKDG RSGRQTGKNY RFFEQLELLD NQNNRMDTTT SISMPVPMPM PMTMIKPATS 180 GYQDFSCQNQ GFNPEFMSTS TSTTSSSGKE SDGSVKKKRK LAGYFERLMK QVLDKQEDLQ 240 NKFLEAIEKC ERDRIAREEA WKMQEIARLK KEKEALANEI AISAAKDAAV IAFLQKISEQ 300 TVQVQSPMDL SHEKKTENSS VKTVGSQENV LQQDNDKQEN MLEKQDIDSA GENSFHMSSG 360 RWPKAEVEAL IKLRTNVDLQ YQDNGSPKWP LWEDISTGMK KLGYDRNAKR CKEKWENINK 420 YYRRVKESQK RRPEDSKTCP YFHLLDSIYQ NKSKKQLLSS ENPGSSIKAG ELLMQIMNQQ 480 QQQQQLEAEN IQRQNVEQSQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MLETSVLLEN SATAAAGGGA VTQVVELSND GGGGGGSVGG GSEEEERSRG EIEGEKNNIS  60
GGNRWPHDET LALLKIRSQM DLAFRDSNLK GPLWDEISRN MGELGYNRNA KKCREKFENI  120
YKYHKRTKDG RSGRQTGKNY RFFEQLELLD NQNNRMDTTT SISMPVPMPM PMTMIKPATS  180
GYQDFSCQNQ GFNPEFMSTS TSTTSSSGKE SDGSVKKKRK LAGYFERLMK QVLDKQEDLQ  240
NKFLEAIEKC ERDRIAREEA WKMQEIARLK KEKEALANEI AISAAKDAAV IAFLQKISEQ  300
TVQVQSPMDL SHEKKTENSS VKTVGSQENV LQQDNDKQEN MLEKQDIDSA GENSFHMSSG  360
RWPKAEVEAL IKLRTNVDLQ YQDNGSPKWP LWEDISTGMK KLGYDRNAKR CKEKWENINK  420
YYRRVKESQK RRPEDSKTCP YFHLLDSIYQ NKSKKQLLSS ENPGSSIKAG ELLMQIMNQQ  480
QQQQQLEAEN IQRQNVEQSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-68	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT34412