PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34350
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 293aa    MW: 32922.2 Da    PI: 8.2972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34350genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.62.9e-15116163355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + h   Er+RR+r+ ++f +L +l+P++     kKl+Ka+iL  A++YIk+L+
  OIT34350 116 QDHVLSERKRRERLTQCFITLSTLIPNL-----KKLDKASILGDAIKYIKQLE 163
               568899**********************.....9*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDMSSATWWS EMPVFGMGTD HRNTYFSSPS PPPSSSSPSV ISFCNTNSPS IQNYQENLNS  60
SVKTEVPSGI TTINFSSQTC PDSDLDDSQH LFQAMGFGAG DINQKKSYSR TPLQAQDHVL  120
SERKRRERLT QCFITLSTLI PNLKKLDKAS ILGDAIKYIK QLENQVKSLE EETKKFSEEP  180
VVAVKRSRLL STYDNSSSSD ENSNTRRTNK SVPEIEVRAA DGNVLIRIYC KKQATIIKEI  240
FSQVEKFNLS IISSSVMPFG DISTYITIVA KMDHQLNMTA EYVAKRIRET IMK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-39bHLH family protein