PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34326
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 431aa    MW: 46113.4 Da    PI: 8.2783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34326genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11427226
              -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
              + e+Cr+f+r G C+yG+rCkF H+
  OIT34326  4 RKEPCRNFLR-GSCQYGERCKFLHV 27
              789*******.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MPPRKEPCRN FLRGSCQYGE RCKFLHVAQQ QPKPNPFGFG SQPSNLQNTN LQQTKSNPYG  60
FGVQNNFQPR GSNDLGPKQS QYKPFENKWT RSTSTNSSSS RQSDNQPVAP NHTCTDSDSC  120
RRQIMEDFNN EKPMWLLTCY GHRKNGPCDV TGDVSYEELR AVAYDDAKRG QSLMSIVERE  180
RNMLNSKAAE FENLLRNYVA PSTSVPNAQS PFPGAVPNAS LSGQSPFPGT APNASLSAQS  240
PFPGTAPNAS LSTQSHFPGA APNASLSAQS SFPPSASSFS QLGALLNTGA SAPPTNTFGQ  300
PSPLGNSVKT SSSSGANAFS FGNAGSGSFG FGSQVTSQSH QSPFTPSNIS ASSERNLSTS  360
TTSQHFPNPS GGQLPTPQGH FSASFAVSPV NINLTNAAST EEFSGDNSIW TKKEWKIGEI  420
PEEAPPDKYI F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-61C3H family protein