PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34162

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 460aa MW: 51894.7 Da PI: 4.9451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34162	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3e-14	259	305	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N+++ Lr+++P++ K++ a+i++ A+eYI++L OIT34162 259 TKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIEYINEL 305 78***********************9.....7*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MYVESDCFDP AASVQHEDVF AIGENTYQQD AAVVAAAALE MQLQQQLNLE MEQCYNTTHN 60 NNNSMQELVN EHNNQGLSCD QTNWGEMSFP PYQNQEDNNN FQHAAHDIQN GHDQQQPYLP 120 TPDLLNMFPL PRSSISFTNT NTNQASNLLT SLGLLGDINI PATADGASNS SAVYDPSLLP 180 LNLPPQPPLL RELFHSLPHG YGLRNLRNTT SFFNGLEERD QLTGALYQDG EERPFDNGIF 240 EFSADMNGIA KNRDIGKDTK HFATERQRRV HLNDKYKALR SMVPNPSKND RASIVKDAIE 300 YINELKREVH DLELMVEKKR CNRDRIKRQK TKEGGNSMDG SNAKQMDEVD QSYNGNSLRS 360 SWLQRRSKNT EVDVRVVDDE VTIKLVQQKR INCLLFASKV LDDLQLDLHH VAGGLIGDYY 420 SFLFNSKICE GSTVYASAIA KKLIEVVDIQ YAAIAPTNSY

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MYVESDCFDP AASVQHEDVF AIGENTYQQD AAVVAAAALE MQLQQQLNLE MEQCYNTTHN  60
NNNSMQELVN EHNNQGLSCD QTNWGEMSFP PYQNQEDNNN FQHAAHDIQN GHDQQQPYLP  120
TPDLLNMFPL PRSSISFTNT NTNQASNLLT SLGLLGDINI PATADGASNS SAVYDPSLLP  180
LNLPPQPPLL RELFHSLPHG YGLRNLRNTT SFFNGLEERD QLTGALYQDG EERPFDNGIF  240
EFSADMNGIA KNRDIGKDTK HFATERQRRV HLNDKYKALR SMVPNPSKND RASIVKDAIE  300
YINELKREVH DLELMVEKKR CNRDRIKRQK TKEGGNSMDG SNAKQMDEVD QSYNGNSLRS  360
SWLQRRSKNT EVDVRVVDDE VTIKLVQQKR INCLLFASKV LDDLQLDLHH VAGGLIGDYY  420
SFLFNSKICE GSTVYASAIA KKLIEVVDIQ YAAIAPTNSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	5e-67	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT34162