PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33834
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 443aa    MW: 49691.8 Da    PI: 6.7421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33834genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-17110156148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
         OIT33834 110 KGQWTDEEDRKLIRLVKQFGERKWAQIAEKMD-ARAGKQCRERWHNHL 156
                      799*****************************.*************97 PP
2Myb_DNA-binding57.14.1e-18162204145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eE++llv+ +kqlG++ W+ Ia++++ gRt++++k++w+
         OIT33834 162 KDTWSEEEELLLVETHKQLGNK-WAEIAKRIP-GRTENSIKNHWN 204
                      679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MGSGSVFRPY QNLPKPRPPL TAIDRFLSSH ENYFYPFSGA NASSSISSSS SHANGISWPK  60
ILPDTSFIEG FFLNEQENGF IEDAKTVQEN KKESWKKEKE GNSTKNYLVK GQWTDEEDRK  120
LIRLVKQFGE RKWAQIAEKM DARAGKQCRE RWHNHLRPDI KKDTWSEEEE LLLVETHKQL  180
GNKWAEIAKR IPGRTENSIK NHWNATKRRM NSRRNKKRNN QQDGGQKERS NVLQDYIGSV  240
YFTDDSFPTA SSFHGGGGGG GGSGGGSSTA TTVTPSNSTP PYSDEDAPSL ITHQTCDEEM  300
NFMQSLFGIK NSLVLCDNKA IEAKETQNLF DDNSSMISSA FNSFPLAKGN VGSYSTSTEK  360
VTDNVVGNYM ADYNTKEVNQ QYHSQHYYCP DIYLSYFLDG SSYMMNQAAA GCSSGGNNKV  420
EVDLMEMVSS SHLPQGPFNN TFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207218KRRMNSRRNKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-63MYB family protein