PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33268

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 1580aa MW: 172760 Da PI: 6.884

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33268	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.3e-06	1557	1580	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G Ck G++C + H+ OIT33268 1557 GQRICK-FYESGRCKKGSSCDYLHP 1580 6899.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1580 aa Download sequence
MDGGNSSSEL YRPCVQQAHS RFDGSTVTSM GLQGSEQCSS VQYMDNFQLV GVPAAVTGGA 60 PITVAVDGRT SVANVIGDGV EKRKRGRPPR FHTTVAKPPP PKKPREEDED VCFICFDGGS 120 LVLCDRKGCP KAYHPACIKR DEAFFRSKAK WNCGWHICSV CQKASHYLCY TCTYSLCKAC 180 TKNADYLCVR GNKGFCSTCM RTIMLIENKD QANKEMVQVD FDDKSSWEYL FKVYWVILKE 240 KLSLTLDELL QAKNPWKESD AVHGKRQLMP YGHYVANDGK SIAGKSFDYI EQKKPIEPLE 300 LSKKDPPTAE IRVVSDSGNA SILRSTPLLE LTKPVQELKV QNEDCLRSKQ ESTVAVTSLN 360 GCMEWASKEL LDFVAHMKDG DTCAISQFDV QALLLDYIKR NNLRDPRKKS QIICDLRLKS 420 LFGKPRVGHI EMLKLLEFHF LIKEESKKSA FIPAGIVGTM TSHVEPDDSN GISSSKKRKT 480 RKNGEVKMTQ INLDEFAAID AHNINFIYLR RDLMETLAED VEKFHDRVVG SVVRIRIPGN 540 DQKQEIYRLV HVVGTSKSSE PYKIRDKTVD VLLEVLNLDK KEALSIDSIS NQDFCEDECR 600 RLRQSIKCGL VKRLTVGEIQ KKAMELRAVK LNDSLEAEIL RLNHLRDRAS EKGHKKEYPL 660 SKQYALIDFL DNSTLRECIE KLELLKTPEE RQRRLMEIPE VHADPKMDPD YESEGDDGGS 720 NYKRKVEYLA PRCTRISRRD EKLMSSGSLA KEEGSIMARC RMSEKREACG SNILDKLGNR 780 LTAEPAVDRS GSETSIASLS TVNSSSANSI ETDKLWHYRD PAGRIQGPFS VMQLRKWNTS 840 GLFPPEMRIW TNHEHDDSIL LTNALKGLFH KEPQLHGKTS NQSWEPAASD SRTSVRWSET 900 ATGSGGECGK REAPGHPHKA NYHSNGNTEF TRMNGLSPSS PQCLNSLKGN SSCFDKPRLS 960 SPVPSSSQRE VILALPRQER GNANDNCRPA TDHGTQNSRG SAMCQINDGC GHNTQSNSRN 1020 LGLSLGQNPG SFTSNRYTIN LDSGSRFASA TKSSDSFEQK GNMSLPDLPS PTPETSYGEL 1080 EAQAAEKLLL LSSVIPVCGS DNHDLPSPTP ISDRETQGGH AAENKESVPS SLPVQESGHK 1140 WSSASSSVVG GVQLREIADG CGRSSPAAKP SIEEWDSGIV SASVSASSQK PAEAVGNNVA 1200 TPMSNANQLT AKPSIEEWDS GIVSSSSLKP AEAVGNHVAS PTSNADQLTA KPSTTEEWDS 1260 GLVSVSSPKP AEAVGDHVAT PTSNADQLNH TSPSHPVSNF FGEPIEFSTL AEESVSDLLA 1320 EVDAMESQNQ NNMGSPTSAM RCGEEMIPGC RNDCFSPIEE LSPTHDPVRS DALSSTGDLQ 1380 LPCQSTVTDE TVGASRADAF DPLRRSGGNS STSSEGETKS ADVLFSQGDA GSNIPCTISQ 1440 TTAFSAMGRN TGLEGMTSGR GAAPGNPIWG GPVQGYANVS VSSSMGAAWG NSHMNRGAPF 1500 TGNPVWDSQR RYAGERSGGP REWALQGGES GFGRGRSSWN RQQPYGGGGY SRPPPKGQRI 1560 CKFYESGRCK KGSSCDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1580 aa Download sequence

MDGGNSSSEL YRPCVQQAHS RFDGSTVTSM GLQGSEQCSS VQYMDNFQLV GVPAAVTGGA  60
PITVAVDGRT SVANVIGDGV EKRKRGRPPR FHTTVAKPPP PKKPREEDED VCFICFDGGS  120
LVLCDRKGCP KAYHPACIKR DEAFFRSKAK WNCGWHICSV CQKASHYLCY TCTYSLCKAC  180
TKNADYLCVR GNKGFCSTCM RTIMLIENKD QANKEMVQVD FDDKSSWEYL FKVYWVILKE  240
KLSLTLDELL QAKNPWKESD AVHGKRQLMP YGHYVANDGK SIAGKSFDYI EQKKPIEPLE  300
LSKKDPPTAE IRVVSDSGNA SILRSTPLLE LTKPVQELKV QNEDCLRSKQ ESTVAVTSLN  360
GCMEWASKEL LDFVAHMKDG DTCAISQFDV QALLLDYIKR NNLRDPRKKS QIICDLRLKS  420
LFGKPRVGHI EMLKLLEFHF LIKEESKKSA FIPAGIVGTM TSHVEPDDSN GISSSKKRKT  480
RKNGEVKMTQ INLDEFAAID AHNINFIYLR RDLMETLAED VEKFHDRVVG SVVRIRIPGN  540
DQKQEIYRLV HVVGTSKSSE PYKIRDKTVD VLLEVLNLDK KEALSIDSIS NQDFCEDECR  600
RLRQSIKCGL VKRLTVGEIQ KKAMELRAVK LNDSLEAEIL RLNHLRDRAS EKGHKKEYPL  660
SKQYALIDFL DNSTLRECIE KLELLKTPEE RQRRLMEIPE VHADPKMDPD YESEGDDGGS  720
NYKRKVEYLA PRCTRISRRD EKLMSSGSLA KEEGSIMARC RMSEKREACG SNILDKLGNR  780
LTAEPAVDRS GSETSIASLS TVNSSSANSI ETDKLWHYRD PAGRIQGPFS VMQLRKWNTS  840
GLFPPEMRIW TNHEHDDSIL LTNALKGLFH KEPQLHGKTS NQSWEPAASD SRTSVRWSET  900
ATGSGGECGK REAPGHPHKA NYHSNGNTEF TRMNGLSPSS PQCLNSLKGN SSCFDKPRLS  960
SPVPSSSQRE VILALPRQER GNANDNCRPA TDHGTQNSRG SAMCQINDGC GHNTQSNSRN  1020
LGLSLGQNPG SFTSNRYTIN LDSGSRFASA TKSSDSFEQK GNMSLPDLPS PTPETSYGEL  1080
EAQAAEKLLL LSSVIPVCGS DNHDLPSPTP ISDRETQGGH AAENKESVPS SLPVQESGHK  1140
WSSASSSVVG GVQLREIADG CGRSSPAAKP SIEEWDSGIV SASVSASSQK PAEAVGNNVA  1200
TPMSNANQLT AKPSIEEWDS GIVSSSSLKP AEAVGNHVAS PTSNADQLTA KPSTTEEWDS  1260
GLVSVSSPKP AEAVGDHVAT PTSNADQLNH TSPSHPVSNF FGEPIEFSTL AEESVSDLLA  1320
EVDAMESQNQ NNMGSPTSAM RCGEEMIPGC RNDCFSPIEE LSPTHDPVRS DALSSTGDLQ  1380
LPCQSTVTDE TVGASRADAF DPLRRSGGNS STSSEGETKS ADVLFSQGDA GSNIPCTISQ  1440
TTAFSAMGRN TGLEGMTSGR GAAPGNPIWG GPVQGYANVS VSSSMGAAWG NSHMNRGAPF  1500
TGNPVWDSQR RYAGERSGGP REWALQGGES GFGRGRSSWN RQQPYGGGGY SRPPPKGQRI  1560
CKFYESGRCK KGSSCDYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT33268