PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33242
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 268aa    MW: 27583.2 Da    PI: 7.5013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33242genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.12e-40411411100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+++
  OIT33242  41 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 141
               7***********************9989********************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MSSNNPSNCT GGGITATGGG GVGGGTSGSS STGGGGGGGG PCGACKFLRR KCVAGCIFAP  60
YFDSEQGAAH FAAVHKVFGA SNVSKLLLHI PVHKRLDAVV TICYEAQARL RDPVYGCVAH  120
IFALQQQVVN LQAELSYLQA HLATLELPTP PPQPPSQQSQ TLLPPQPAAL SIADLPTAGP  180
SILPAAYDLS SLFDPMVQPS WAMQQPRPSP MDPRHYGGGA RAPVEMSPST TGGGSGDLQE  240
LARELLHRHG SPTVVQCTES SALPPQTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-79LBD family protein