PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33039
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 309aa    MW: 33770.6 Da    PI: 8.2501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33039genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000222032411255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  OIT33039 203 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 241
               5567778899999999987.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MAGNPTNNWW SMMMNGSIMH PNHESQQFSS SSSSSSSSQH FYGSSNFLAD INIPSQDFPR  60
SWSQLLLSGL SGEQEKSGMS HFHQYKKLQE KWEEVQSLNS INPSSSCFRV PVVDVKPQVV  120
GQVLYSNYQD FPAASSPANS CVTTNLSHDI LNFSGNKITS KVEAKHQHPD HSSECNSTSS  180
GGVTKKARVQ HSSAQPSLKL QVRKEKLGDR ITALHQLVSP FGKTDTASVL SEAIGYIRFL  240
QGQIQALSSP YMGNVAGSMG HTHQQSDSQH RVKDLRSRGL CLVPISCTQH VGNDTVGDYW  300
APALGGGYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-51bHLH family protein