PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32840
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 276aa    MW: 29279.4 Da    PI: 7.9872
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32840genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.44.5e-69371923154
    DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstklssaesk 97 
                g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++      +++++k+kr+ +  ++s+l +t+l+s+++ 
  OIT32840  37 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQRQERHdqlhldHNNNNKSKRQREDPSASSLVCTRLPSNTN- 136
               5789***************************************************999988877778988866666666666678899999999999874. PP

    DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 le+ ++P++vss+avf+c+++ss++d+ ++laYq+av+igGhvfkGiLydqG+e+
  OIT32840 137 -GLEVGNFPAKVSSAAVFQCIQMSSIEDAADQLAYQAAVNIGGHVFKGILYDQGPES 192
               .689999************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MSKILDSVES ISERPHPFFA GDQEASRSGF VMMRSGGGGI SCQDCGNQAK KDCQHMRCRT  60
CCKSRGFQCQ THVKSTWVPA AKRRERQQQL SALQQQRQER HDQLHLDHNN NNKSKRQRED  120
PSASSLVCTR LPSNTNGLEV GNFPAKVSSA AVFQCIQMSS IEDAADQLAY QAAVNIGGHV  180
FKGILYDQGP ESEYNNNMAA AGDTSSGGGS GSAGVPHHHN SAATAIIASG GATAAAAAAA  240
AAAAEASNFL DPSLFPAPLS TFMSAGTQFF PHPRSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118KSKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.16e-62SRS family protein