PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT32840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 276aa MW: 29279.4 Da PI: 7.9872 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 223.4 | 4.5e-69 | 37 | 192 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstklssaesk 97 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ +++++k+kr+ + ++s+l +t+l+s+++ OIT32840 37 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQRQERHdqlhldHNNNNKSKRQREDPSASSLVCTRLPSNTN- 136 5789***************************************************999988877778988866666666666678899999999999874. PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le+ ++P++vss+avf+c+++ss++d+ ++laYq+av+igGhvfkGiLydqG+e+ OIT32840 137 -GLEVGNFPAKVSSAAVFQCIQMSSIEDAADQLAYQAAVNIGGHVFKGILYDQGPES 192 .689999************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence |
MSKILDSVES ISERPHPFFA GDQEASRSGF VMMRSGGGGI SCQDCGNQAK KDCQHMRCRT 60 CCKSRGFQCQ THVKSTWVPA AKRRERQQQL SALQQQRQER HDQLHLDHNN NNKSKRQRED 120 PSASSLVCTR LPSNTNGLEV GNFPAKVSSA AVFQCIQMSS IEDAADQLAY QAAVNIGGHV 180 FKGILYDQGP ESEYNNNMAA AGDTSSGGGS GSAGVPHHHN SAATAIIASG GATAAAAAAA 240 AAAAEASNFL DPSLFPAPLS TFMSAGTQFF PHPRSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 118 | KSKRQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 6e-62 | SRS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT32840 |