PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT32771
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 346aa    MW: 39306.3 Da    PI: 5.0271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT32771genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-12178221654
               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OIT32771 178 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 221
               589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MELTQQDFLE ELLAPRIESW NSFTSGVKEF FPNAWNFESS CSFYQQNPEF IAQNSSLLEL  60
ISPVESNFPC PSFTPQESYP FLDAFITAPA EVDSTNYIQE EYSNRVIVEE GEGVGLISTD  120
FHGHIGPRED SSCFSNKVKM EEATSRINNI GHVPNNMGEK KSSTTKIKKV EGQPSKNLMA  180
ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LIDKIHRLHE DDEMEDETKD  240
RKLLGNYKEL KANEALVRNP PKFDVERRNE ETRIEICCAG KPGLVLSTVS TIEALGLDVQ  300
QCVVSCFSDF SMRASCSEAT EHRTILRSED VKQALFKTAG YGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181188ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-87bHLH family protein