PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32768

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 369aa MW: 42040.5 Da PI: 8.6513

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32768	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.2e-25	78	121	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e OIT32768 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121 79***************************************986 PP
2	QLQ	59.6	9.2e-21	11	45	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll i+ OIT32768 11 PFTANQWQELEHQALIYKYMVSGMPVPPDLLYTIR 45 8*****************************97776 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MMSTTARNRF PFTANQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSLDS SLSSKLILHQ 60 PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EIMTTTSTNT STTTRPISTI ATTNTTTPTA ISISSINKNT NNISSSSPNS SHHSFSYLTS 180 NHEPHQYPFL YPHSSSSRPS PAAIGLESSP YSRNGYSDGM KEDVDEHIFF SETSGTVRST 240 CGSNSVDDTW QLSPLTMGSS MKQRTNSLSQ NTGHSASSYL QLQSLNESST KDHHHQYYND 300 VKGMKLETED HQQQQQPKKV MHHFFDEWPK DNKDSWLDSE DKYSGLSKTQ LSISIPNPSY 360 DFFITTNEK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MMSTTARNRF PFTANQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSLDS SLSSKLILHQ  60
PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EIMTTTSTNT STTTRPISTI ATTNTTTPTA ISISSINKNT NNISSSSPNS SHHSFSYLTS  180
NHEPHQYPFL YPHSSSSRPS PAAIGLESSP YSRNGYSDGM KEDVDEHIFF SETSGTVRST  240
CGSNSVDDTW QLSPLTMGSS MKQRTNSLSQ NTGHSASSYL QLQSLNESST KDHHHQYYND  300
VKGMKLETED HQQQQQPKKV MHHFFDEWPK DNKDSWLDSE DKYSGLSKTQ LSISIPNPSY  360
DFFITTNEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-54	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT32768