PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT32558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24683.2 Da PI: 8.4965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.9 | 5e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+G+vg++++++++++q+++e++l OIT32558 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPENQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWHVCQAAVETVL 102 6***********************************************************************************************99987 PP DUF260 97 l 97 + OIT32558 103 R 103 6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence |
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPENQR 60 PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WHVCQAAVET VLRGGTLSPI PELFGKSSEL 120 DEESECTHVF KLLNHTQNTR SKMQKRRGSS DEAAAKVLQL ENLDLSLLTR GFQSEIVYSP 180 LPEKRRPRTP SRKSEESVTT TYFESSLGDH QGKQPRLLSL FT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 5e-79 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT32558 |