PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32536

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 356aa MW: 39516.7 Da PI: 7.8842

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32536	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	7.1e-25	83	127	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ OIT32536 83 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 127 79****************************************986 PP
2	QLQ	65.5	1.3e-22	22	57	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ OIT32536 22 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 57 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MSGSTSTSVV GGGGYGYGYR PPFTAVQWQE LEHQAMIYKY LVAGLPVPPD LVVPIRRSFE 60 AISARFFHHP SSGYCSYYGK KFDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR 120 SRKPVESQSA SQSLSTSMSL ITTGSSNTRG SFQSSSSGSF QHMPLYSVAN SEELNYGSSA 180 TKLQMEPVSY GIDTKDYRYL HGIAPDADEH NLSSETSATV RNLGMGTTMD STWVLPSQVS 240 SSPAARPKND SQLLGSSQQM HLPNLLEPMI DSTISKRRHQ HCFFGSEIDS PGTVKQEQQS 300 MRPFFNEWPT AKESWSNLDD EESNKNNFST TQLSISIPMA PSDFSSRSAC SPNGEN

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MSGSTSTSVV GGGGYGYGYR PPFTAVQWQE LEHQAMIYKY LVAGLPVPPD LVVPIRRSFE  60
AISARFFHHP SSGYCSYYGK KFDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR  120
SRKPVESQSA SQSLSTSMSL ITTGSSNTRG SFQSSSSGSF QHMPLYSVAN SEELNYGSSA  180
TKLQMEPVSY GIDTKDYRYL HGIAPDADEH NLSSETSATV RNLGMGTTMD STWVLPSQVS  240
SSPAARPKND SQLLGSSQQM HLPNLLEPMI DSTISKRRHQ HCFFGSEIDS PGTVKQEQQS  300
MRPFFNEWPT AKESWSNLDD EESNKNNFST TQLSISIPMA PSDFSSRSAC SPNGEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-48	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT32536