PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT32453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 14578.8 Da PI: 5.0012 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.1 | 5.7e-33 | 12 | 112 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC +lr+kCa++C lapyfp++++++f+nv +lFG+sn++++l+++ ++e++ ++++sl+ eA++r ++PvyG++++ +kl+ ++++++el+ +++ OIT32453 12 KCAACMYLRKKCAANCQLAPYFPSDRTEDFQNVYQLFGVSNIINMLNSVddDDEQKGKMAESLILEAKIRKENPVYGCLAIERKLRLAIQETEKELEIVQK 112 5************************************************66667799***************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence |
MENADPVISN EKCAACMYLR KKCAANCQLA PYFPSDRTED FQNVYQLFGV SNIINMLNSV 60 DDDDEQKGKM AESLILEAKI RKENPVYGCL AIERKLRLAI QETEKELEIV QKTNAFYKEM 120 AKSQMQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-27 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT32453 |