PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32296

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 331aa MW: 37274.6 Da PI: 6.1991

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32296	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H OIT32296 194 YRCETCNKIFRSYQALGGHRASH 216 9***********99999998887 PP
2	zf-C2H2	12.7	0.0004	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H OIT32296 240 HECPICYRVFSSGQALGGHKRSH 262 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MEKHKTCKLC SRKFANGRAL GGHMRSHMMN LYIQQQQKHH QISEETESIP SSSWSSEEEN 60 GEKSKILNLS DFSGEEAADD SVVLPDKESE TESSKNPTRS RRSKRVRKSS IINPNFVKVT 120 EYYSSLVETE PVSSISETSP EEDVAHCLMM LSRDKWIKQQ VDHYSDEEEE EEYKEENSGV 180 QVKVITKNRG RGKYRCETCN KIFRSYQALG GHRASHKKIK VSNYNNEVVE NVGVIEEKIH 240 ECPICYRVFS SGQALGGHKR SHVIGVSTAA ANISVPVFIP TAAKLEFSRN GGSLIDLNLP 300 PPMEELDDEI ISQVEVSAVS DDAEFVNPIK H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-51	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT32296