PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32247

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 353aa MW: 38793.3 Da PI: 6.0626

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32247	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	22.3	4.1e-07	9	95	42	126
TCP 42 dkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararert 126 d +sk+++WL+++akpai+el+++ s+s+a+ + + ++ +++ ++++ ++++++ nl + s+++a a+ r++t OIT32247 9 DYPSKAVDWLIKKAKPAIDELAELpawkptlgsvsvSASAANTS--------------NLEQDQSQDENFTFHQENATTNLFDnaagPSNKRAMATLRNET 95 88**********************54444443332222222111..............1111222233333333333333333110133333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MHQISQTIDY PSKAVDWLIK KAKPAIDELA ELPAWKPTLG SVSVSASAAN TSNLEQDQSQ 60 DENFTFHQEN ATTNLFDNAA GPSNKRAMAT LRNETNTSGS FLPPSLESDA IADTIKSFFP 120 MGSSTAANSS AMQFQSFHQE TNNMLSRTSS QNQDLRLSLQ FQDPILLHHQ NQQAQHQHQH 180 QHQTNNHREE LQAQVGHFTP LGFDSSGCWS SMHQQQQPVG RVQRLASWND NRDTTAQGGG 240 YLFNSQPGQP PLLQQLFGGQ NQFYTQRGPL QSSNTPSVRA WIDPTSSAIA IASADQAVLP 300 MYHHPSTIPP GYGFASEIGG FSGFRIPARI QGEEEEHDGI SDKPSSASSD SRH

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MHQISQTIDY PSKAVDWLIK KAKPAIDELA ELPAWKPTLG SVSVSASAAN TSNLEQDQSQ  60
DENFTFHQEN ATTNLFDNAA GPSNKRAMAT LRNETNTSGS FLPPSLESDA IADTIKSFFP  120
MGSSTAANSS AMQFQSFHQE TNNMLSRTSS QNQDLRLSLQ FQDPILLHHQ NQQAQHQHQH  180
QHQTNNHREE LQAQVGHFTP LGFDSSGCWS SMHQQQQPVG RVQRLASWND NRDTTAQGGG  240
YLFNSQPGQP PLLQQLFGGQ NQFYTQRGPL QSSNTPSVRA WIDPTSSAIA IASADQAVLP  300
MYHHPSTIPP GYGFASEIGG FSGFRIPARI QGEEEEHDGI SDKPSSASSD SRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-48	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT32247