PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32208

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 825aa MW: 94723.4 Da PI: 7.4861

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32208	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.5	9.4e-28	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw+++++ ++HnHel p OIT32208 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGATPESDAG---TSRRPSVKKTDCKASMHVKRKRDGKWYIHEFIKDHNHELLP 153 9*************************************999888...7788899*****************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence
MVDHGVVVQS SLQVIGDMVD AVDNTCHNRD GGVATSPKRS ITGVEGNADL EPRDGIEFES 60 HEAGYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGATPESD AGTSRRPSVK 120 KTDCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ LDRGRCLSLE EGDAQVMLEY FMHIQRENPY 240 FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY TKSNEKMPFV LFVGVNHHCQ 300 PMLLGCALVA DETKPTFVWL MKTWLRAVSG QAPKVMITDQ DKSLKAAIEE VFPCSRHCFA 360 LWHVLERIPD ILAHVVKQHE NFMEKFSKCI FKSVTDEQFD LRWWKMVSRF ELQENEWIHT 420 LYEERRKWVP AYMRGSFFAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE 480 EEAVADFEIL QKHPALKSPS PWEKQMSTIY THAIFRKFQV EVLGVVGCHP KKEAENGENV 540 TFRVNDCEKN ENFMVTWNEA KSDVSCSCLL FEYKGFLCRH AMNVLQICGL PSIPSQYILK 600 RWTKDAKNRQ LLLEGTERIT RVQRYNDLCR RAIELGEEGS LSEESYGIAF RVLDEALKDC 660 VNVNNRSSTL TECSSSAIGL RDLEQDTQGI HATKTSRKKN TNKKRKVHTE PEAAIVEAQD 720 SLQQMDNLSV GGMTLNGYYG TQQNVQGLLN LMEPPHDGYY VNQQNMQGLG QLNTIAPGHD 780 GFFGSQQSIP GLGHLDFRQP SFTYGLQDEP SLRASQLHGN SARHA

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence

MVDHGVVVQS SLQVIGDMVD AVDNTCHNRD GGVATSPKRS ITGVEGNADL EPRDGIEFES  60
HEAGYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGATPESD AGTSRRPSVK  120
KTDCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ LDRGRCLSLE EGDAQVMLEY FMHIQRENPY  240
FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY TKSNEKMPFV LFVGVNHHCQ  300
PMLLGCALVA DETKPTFVWL MKTWLRAVSG QAPKVMITDQ DKSLKAAIEE VFPCSRHCFA  360
LWHVLERIPD ILAHVVKQHE NFMEKFSKCI FKSVTDEQFD LRWWKMVSRF ELQENEWIHT  420
LYEERRKWVP AYMRGSFFAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE  480
EEAVADFEIL QKHPALKSPS PWEKQMSTIY THAIFRKFQV EVLGVVGCHP KKEAENGENV  540
TFRVNDCEKN ENFMVTWNEA KSDVSCSCLL FEYKGFLCRH AMNVLQICGL PSIPSQYILK  600
RWTKDAKNRQ LLLEGTERIT RVQRYNDLCR RAIELGEEGS LSEESYGIAF RVLDEALKDC  660
VNVNNRSSTL TECSSSAIGL RDLEQDTQGI HATKTSRKKN TNKKRKVHTE PEAAIVEAQD  720
SLQQMDNLSV GGMTLNGYYG TQQNVQGLLN LMEPPHDGYY VNQQNMQGLG QLNTIAPGHD  780
GFFGSQQSIP GLGHLDFRQP SFTYGLQDEP SLRASQLHGN SARHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT32208