PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32195

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 410aa MW: 46781.3 Da PI: 5.4094

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32195	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.2	3.8e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +r C+ + k+++++C ++ +lC++C ++ H + H++v OIT32195 17 ARACDSCIMKRARWYCAADDAFLCQSCDSSVH-SvnplarrHERV 60 578*****************************.446777778766 PP
2	CCT	69.1	1.2e-23	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OIT32195 355 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 398 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MTSSEKKLSN VVGAKTARAC DSCIMKRARW YCAADDAFLC QSCDSSVHSV NPLARRHERV 60 RLKTSSLKSS DEFSNSENSA SVPSWHRGFT RKARTPRNGK NSRNVKNPIQ LIVPEILSDE 120 NSQDENEEQL LYRVPILDPF VADDALGNEY SKEMKNDFND DHHMNRFHGM LNIPSEMELA 180 EFAADVESLL GKGLDDEESF NYMELGLGFL EKHDDSIGCT FIDEKIKVEN EGEMDSTNYN 240 QVDYSDTFDL KFDCDSPVIT LEEDDKGEVG EINMRDSTND GLISDRKNNK ILLNLDYGGV 300 LNAWADQRSP WTTGERPQVD SNDCWPICMG NCGKIHAYGD MEIMTGHGPV VDEGREARVL 360 RYKEKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTNF APTPFPSLNR

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MTSSEKKLSN VVGAKTARAC DSCIMKRARW YCAADDAFLC QSCDSSVHSV NPLARRHERV  60
RLKTSSLKSS DEFSNSENSA SVPSWHRGFT RKARTPRNGK NSRNVKNPIQ LIVPEILSDE  120
NSQDENEEQL LYRVPILDPF VADDALGNEY SKEMKNDFND DHHMNRFHGM LNIPSEMELA  180
EFAADVESLL GKGLDDEESF NYMELGLGFL EKHDDSIGCT FIDEKIKVEN EGEMDSTNYN  240
QVDYSDTFDL KFDCDSPVIT LEEDDKGEVG EINMRDSTND GLISDRKNNK ILLNLDYGGV  300
LNAWADQRSP WTTGERPQVD SNDCWPICMG NCGKIHAYGD MEIMTGHGPV VDEGREARVL  360
RYKEKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTNF APTPFPSLNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	366	382	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-98	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT32195