PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31965

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 343aa MW: 39059.4 Da PI: 6.6878

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31965	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	180	199	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OIT31965 180 FSCPLCFKTFNRYNNMQMHM 199 89*****************9 PP
2	zf-C2H2	14.6	9.7e-05	264	286	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OIT31965 264 FMCRKCGKAFAVRGDWRTHEKNC 286 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SSYNYILPST NFQYNEYFQT SPPSPPLKEP 60 LPLLSLSPTI RKIQDQDYSS NSTTMEVDNN SKENKEESFI SNFGDDQEDD ESVSVALQLG 120 LPNPSPELIS RISTTNTIEE TNKEDQEVTL ANGYSTTSTL HKGQYWIPTP AQILIGPTQF 180 SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCFCCA PGCRNNIDHP 240 RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCTCGSDFKH 300 KRSLKDHIKA FGNGHAAYGI DCLEEEDEPA SEIEQDNDHD PST

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SSYNYILPST NFQYNEYFQT SPPSPPLKEP  60
LPLLSLSPTI RKIQDQDYSS NSTTMEVDNN SKENKEESFI SNFGDDQEDD ESVSVALQLG  120
LPNPSPELIS RISTTNTIEE TNKEDQEVTL ANGYSTTSTL HKGQYWIPTP AQILIGPTQF  180
SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCFCCA PGCRNNIDHP  240
RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCTCGSDFKH  300
KRSLKDHIKA FGNGHAAYGI DCLEEEDEPA SEIEQDNDHD PST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-135	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT31965